Result of FASTA (omim) for pF1KSDA0091
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0091, 1052 aa
  1>>>pF1KSDA0091 1052 - 1052 aa - 1052 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5810+/-0.0004; mu= 15.0468+/- 0.025
 mean_var=90.1353+/-18.392, 0's: 0 Z-trim(113.8): 14  B-trim: 1183 in 1/48
 Lambda= 0.135091
 statistics sampled from 23357 (23369) to 23357 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.274), width:  16
 Scan time: 11.000

The best scores are:                                      opt bits E(85289)
NP_003782 (OMIM: 603355) membrane-bound transcript (1052) 7205 1415.1       0
XP_016879305 (OMIM: 603355) PREDICTED: membrane-bo ( 611) 4243 837.8       0
XP_016879306 (OMIM: 603355) PREDICTED: membrane-bo ( 556) 3878 766.6       0


>>NP_003782 (OMIM: 603355) membrane-bound transcription   (1052 aa)
 initn: 7205 init1: 7205 opt: 7205  Z-score: 7585.0  bits: 1415.1 E(85289):    0
Smith-Waterman score: 7205; 100.0% identity (100.0% similar) in 1052 aa overlap (1-1052:1-1052)

               10        20        30        40        50        60
pF1KSD MKLVNIWLLLLVVLLCGKKHLGDRLEKKSFEKAPCPGCSHLTLKVEFSSTVVEYEYIVAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MKLVNIWLLLLVVLLCGKKHLGDRLEKKSFEKAPCPGCSHLTLKVEFSSTVVEYEYIVAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NGYFTAKARNSFISSALKSSEVDNWRIIPRNNPSSDYPSDFEVIQIKEKQKAGLLTLEDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NGYFTAKARNSFISSALKSSEVDNWRIIPRNNPSSDYPSDFEVIQIKEKQKAGLLTLEDH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PNIKRVTPQRKVFRSLKYAESDPTVPCNETRWSQKWQSSRPLRRASLSLGSGFWHATGRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PNIKRVTPQRKVFRSLKYAESDPTVPCNETRWSQKWQSSRPLRRASLSLGSGFWHATGRH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SSRRLLRAIPRQVAQTLQADVLWQMGYTGANVRVAVFDTGLSEKHPHFKNVKERTNWTNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SSRRLLRAIPRQVAQTLQADVLWQMGYTGANVRVAVFDTGLSEKHPHFKNVKERTNWTNE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RTLDDGLGHGTFVAGVIASMRECQGFAPDAELHIFRVFTNNQVSYTSWFLDAFNYAILKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RTLDDGLGHGTFVAGVIASMRECQGFAPDAELHIFRVFTNNQVSYTSWFLDAFNYAILKK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IDVLNLSIGGPDFMDHPFVDKVWELTANNVIMVSAIGNDGPLYGTLNNPADQMDVIGVGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IDVLNLSIGGPDFMDHPFVDKVWELTANNVIMVSAIGNDGPLYGTLNNPADQMDVIGVGG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IDFEDNIARFSSRGMTTWELPGGYGRMKPDIVTYGAGVRGSGVKGGCRALSGTSVASPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IDFEDNIARFSSRGMTTWELPGGYGRMKPDIVTYGAGVRGSGVKGGCRALSGTSVASPVV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AGAVTLLVSTVQKRELVNPASMKQALIASARRLPGVNMFEQGHGKLDLLRAYQILNSYKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AGAVTLLVSTVQKRELVNPASMKQALIASARRLPGVNMFEQGHGKLDLLRAYQILNSYKP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD QASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTGRIVDKPDWQPYLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTGRIVDKPDWQPYLPQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD NGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMITVASPAETESKNGAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMITVASPAETESKNGAE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD QTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMKNDPLDWNGDHIHTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMKNDPLDWNGDHIHTN
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD FRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEEIAKLRRDVDNGLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEEIAKLRRDVDNGLSL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD VIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWNMGFSDGLYEGEFTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWNMGFSDGLYEGEFTL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVPILGLYQIPAEGGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVPILGLYQIPAEGGGR
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD IVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPPSGAGSVTPERM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPPSGAGSVTPERM
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD EGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQKLLSIDLDKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQKLLSIDLDKV
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD VLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFAFLGAMVVLAFFVVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFAFLGAMVVLAFFVVQ
              970       980       990      1000      1010      1020

             1030      1040      1050  
pF1KSD INKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
       ::::::::::::::::::::::::::::::::
NP_003 INKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
             1030      1040      1050  

>>XP_016879305 (OMIM: 603355) PREDICTED: membrane-bound   (611 aa)
 initn: 4243 init1: 4243 opt: 4243  Z-score: 4468.9  bits: 837.8 E(85289):    0
Smith-Waterman score: 4243; 100.0% identity (100.0% similar) in 611 aa overlap (442-1052:1-611)

             420       430       440       450       460       470 
pF1KSD GTSVASPVVAGAVTLLVSTVQKRELVNPASMKQALIASARRLPGVNMFEQGHGKLDLLRA
                                     ::::::::::::::::::::::::::::::
XP_016                               MKQALIASARRLPGVNMFEQGHGKLDLLRA
                                             10        20        30

             480       490       500       510       520       530 
pF1KSD YQILNSYKPQASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTGRIVDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YQILNSYKPQASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTGRIVDK
               40        50        60        70        80        90

             540       550       560       570       580       590 
pF1KSD PDWQPYLPQNGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMITVASPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDWQPYLPQNGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMITVASPA
              100       110       120       130       140       150

             600       610       620       630       640       650 
pF1KSD ETESKNGAEQTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMKNDPLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETESKNGAEQTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMKNDPLD
              160       170       180       190       200       210

             660       670       680       690       700       710 
pF1KSD WNGDHIHTNFRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEEIAKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WNGDHIHTNFRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEEIAKLR
              220       230       240       250       260       270

             720       730       740       750       760       770 
pF1KSD RDVDNGLSLVIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWNMGFSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDVDNGLSLVIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWNMGFSD
              280       290       300       310       320       330

             780       790       800       810       820       830 
pF1KSD GLYEGEFTLANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVPILGLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLYEGEFTLANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVPILGLY
              340       350       360       370       380       390

             840       850       860       870       880       890 
pF1KSD QIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQRPPSG
              400       410       420       430       440       450

             900       910       920       930       940       950 
pF1KSD AGSVTPERMEGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGSVTPERMEGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQK
              460       470       480       490       500       510

             960       970       980       990      1000      1010 
pF1KSD LLSIDLDKVVLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFAFLGAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLSIDLDKVVLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFAFLGAM
              520       530       540       550       560       570

            1020      1030      1040      1050  
pF1KSD VVLAFFVVQINKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
       :::::::::::::::::::::::::::::::::::::::::
XP_016 VVLAFFVVQINKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
              580       590       600       610 

>>XP_016879306 (OMIM: 603355) PREDICTED: membrane-bound   (556 aa)
 initn: 3878 init1: 3878 opt: 3878  Z-score: 4085.1  bits: 766.6 E(85289):    0
Smith-Waterman score: 3878; 100.0% identity (100.0% similar) in 556 aa overlap (497-1052:1-556)

        470       480       490       500       510       520      
pF1KSD DLLRAYQILNSYKPQASLSPSYIDLTECPYMWPYCSQPIYYGGMPTVVNVTILNGMGVTG
                                     ::::::::::::::::::::::::::::::
XP_016                               MWPYCSQPIYYGGMPTVVNVTILNGMGVTG
                                             10        20        30

        530       540       550       560       570       580      
pF1KSD RIVDKPDWQPYLPQNGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RIVDKPDWQPYLPQNGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGHVMIT
               40        50        60        70        80        90

        590       600       610       620       630       640      
pF1KSD VASPAETESKNGAEQTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VASPAETESKNGAEQTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPGYFPRDNLRMK
              100       110       120       130       140       150

        650       660       670       680       690       700      
pF1KSD NDPLDWNGDHIHTNFRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDPLDWNGDHIHTNFRDMYQHLRSMGYFVEVLGAPFTCFDASQYGTLLMVDSEEEYFPEE
              160       170       180       190       200       210

        710       720       730       740       750       760      
pF1KSD IAKLRRDVDNGLSLVIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAKLRRDVDNGLSLVIFSDWYNTSVMRKVKFYDENTRQWWMPDTGGANIPALNELLSVWN
              220       230       240       250       260       270

        770       780       790       800       810       820      
pF1KSD MGFSDGLYEGEFTLANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFSDGLYEGEFTLANHDMYYASGCSIAKFPEDGVVITQTFKDQGLEVLKQETAVVENVP
              280       290       300       310       320       330

        830       840       850       860       870       880      
pF1KSD ILGLYQIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILGLYQIPAEGGGRIVLYGDSNCLDDSHRQKDCFWLLDALLQYTSYGVTPPSLSHSGNRQ
              340       350       360       370       380       390

        890       900       910       920       930       940      
pF1KSD RPPSGAGSVTPERMEGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPPSGAGSVTPERMEGNHLHRYSKVLEAHLGDPKPRPLPACPRLSWAKPQPLNETAPSNL
              400       410       420       430       440       450

        950       960       970       980       990      1000      
pF1KSD WKHQKLLSIDLDKVVLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WKHQKLLSIDLDKVVLPNFRSNRPQVRPLSPGESGAWDIPGGIMPGRYNQEVGQTIPVFA
              460       470       480       490       500       510

       1010      1020      1030      1040      1050  
pF1KSD FLGAMVVLAFFVVQINKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
       ::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLGAMVVLAFFVVQINKAKSRPKRRKPRVKRPQLMQQVHPPKTPSV
              520       530       540       550      




1052 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:55:30 2016 done: Wed Nov  2 23:55:31 2016
 Total Scan time: 11.000 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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