Result of FASTA (ccds) for pF1KSDA0064
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0064, 470 aa
  1>>>pF1KSDA0064 470 - 470 aa - 470 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7566+/-0.000809; mu= 15.8736+/- 0.049
 mean_var=74.3173+/-14.660, 0's: 0 Z-trim(107.7): 33  B-trim: 0 in 0/52
 Lambda= 0.148775
 statistics sampled from 9728 (9749) to 9728 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.299), width:  16
 Scan time:  2.900

The best scores are:                                      opt bits E(32554)
CCDS1750.1 SNX17 gene_id:9784|Hs108|chr2           ( 470) 3046 663.1 1.8e-190
CCDS58704.1 SNX17 gene_id:9784|Hs108|chr2          ( 445) 2734 596.1 2.4e-170
CCDS6288.1 SNX31 gene_id:169166|Hs108|chr8         ( 440) 1061 237.0   3e-62
CCDS1001.1 SNX27 gene_id:81609|Hs108|chr1          ( 528)  406 96.5 7.3e-20
CCDS81377.1 SNX27 gene_id:81609|Hs108|chr1         ( 541)  406 96.5 7.5e-20


>>CCDS1750.1 SNX17 gene_id:9784|Hs108|chr2                (470 aa)
 initn: 3046 init1: 3046 opt: 3046  Z-score: 3533.2  bits: 663.1 E(32554): 1.8e-190
Smith-Waterman score: 3046; 100.0% identity (100.0% similar) in 470 aa overlap (1-470:1-470)

               10        20        30        40        50        60
pF1KSD MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
              370       380       390       400       410       420

              430       440       450       460       470
pF1KSD SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL
              430       440       450       460       470

>>CCDS58704.1 SNX17 gene_id:9784|Hs108|chr2               (445 aa)
 initn: 2859 init1: 2734 opt: 2734  Z-score: 3171.7  bits: 596.1 E(32554): 2.4e-170
Smith-Waterman score: 2813; 94.7% identity (94.7% similar) in 470 aa overlap (1-470:1-445)

               10        20        30        40        50        60
pF1KSD MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
       :::::::::::::::::::::                         ::::::::::::::
CCDS58 MHFSIPETESRSGDSGGSAYV-------------------------LRKEYGANVLPAFP
               10        20                                 30     

               70        80        90       100       110       120
pF1KSD PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE
          40        50        60        70        80        90     

              130       140       150       160       170       180
pF1KSD VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
         100       110       120       130       140       150     

              190       200       210       220       230       240
pF1KSD EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
         160       170       180       190       200       210     

              250       260       270       280       290       300
pF1KSD KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
         220       230       240       250       260       270     

              310       320       330       340       350       360
pF1KSD LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ
         280       290       300       310       320       330     

              370       380       390       400       410       420
pF1KSD WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
         340       350       360       370       380       390     

              430       440       450       460       470
pF1KSD SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL
         400       410       420       430       440     

>>CCDS6288.1 SNX31 gene_id:169166|Hs108|chr8              (440 aa)
 initn: 913 init1: 782 opt: 1061  Z-score: 1231.1  bits: 237.0 E(32554): 3e-62
Smith-Waterman score: 1061; 43.4% identity (74.4% similar) in 387 aa overlap (1-386:3-382)

                 10        20        30        40        50        
pF1KSD   MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPA
         ::: :: ...:: :. :. :: :..:..: : :::::::: : .::::. .: : :: 
CCDS62 MKMHFCIPVSQQRS-DALGGRYVLYSVHLDGFLFCRVRYSQLHGWNEQLRRVFG-NCLPP
               10         20        30        40        50         

       60        70        80        90       100       110        
pF1KSD FPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVS
       ::::  ...: : ...::.:::.:.: : .:: .  :..:  ::. :: .: .. :... 
CCDS62 FPPKYYLAMTTAMADERRDQLEQYLQNVTMDPNVLRSDVFVEFLKLAQLNTFDIATKKAY
       60        70        80        90       100       110        

      120       130       140       150       160       170        
pF1KSD LEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRK
       :...: : :.. ....::: .: :::.:. :. :  .:.:::.:::.:  ..: .: :.:
CCDS62 LDIFLPNEQSIRIEIITSDTAERVLEVVSHKIGLCRELLGYFGLFLIRFGKEGKLSVVKK
      120       130       140       150       160       170        

      180       190       200       210       220       230        
pF1KSD LQEFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWIL
       : .:::::::. : . .. :. ::: :   . :. .:. ::...::: :...:::.::  
CCDS62 LADFELPYVSLGSSEVENCKVGLRKWYMAPSLDSVLMDCRVAVDLLYMQAIQDIEKGWAK
      180       190       200       210       220       230        

      240       250       260       270       280       290        
pF1KSD VTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELS
        :. :...:...:.. :. .::.::. .::::::..: :. :.::.   .:.:.::.:.:
CCDS62 PTQAQRQKLEAFQKEDSQTKFLELAREVRHYGYLQLDPCTCDYPESGSGAVLSVGNNEIS
      240       250       260       270       280       290        

      300       310       320       330       340       350        
pF1KSD LQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDR
         . :: .: ..  :...:..::.::    : .  :..: :  ..  ::: :.:  :.: 
CCDS62 CCITLPDSQTQDIVFQMSRVKCWQVTFLGTLLD--TDGPQRTLNQ-NLELRFQY--SEDS
      300       310       320       330         340          350   

       360       370       380       390       400       410       
pF1KSD L-QWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPP
         :: .: . ::...: ::..:..: :::                               
CCDS62 CWQWFVIYTKQAFLLSSCLKKMISEKMVKLAAENTEMQIEVPEQSKSKKYHIQQSQQKDY
           360       370       380       390       400       410   

>>CCDS1001.1 SNX27 gene_id:81609|Hs108|chr1               (528 aa)
 initn: 269 init1: 174 opt: 406  Z-score: 470.1  bits: 96.5 E(32554): 7.3e-20
Smith-Waterman score: 436; 25.7% identity (58.1% similar) in 389 aa overlap (4-387:166-525)

                                          10        20        30   
pF1KSD                            MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHC
                                     :.:.   .  ...:  .:.::... :   :
CCDS10 PPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPR--YKHVEQNGEKFVVYNVYMAGRQLC
         140       150       160         170       180       190   

            40        50        60        70        80        90   
pF1KSD RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLG
         :: ..  ::..:..:..  ..: .: :  :::.  ... ::. ::.:.. : .  ..:
CCDS10 SKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIG
           200       210       220       230       240       250   

           100       110       120       130       140       150   
pF1KSD SSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLP
        :. .. :: ..... . :   .: :.: : .:  : : :  .. :..: .:.:::. . 
CCDS10 ESDIMQEFLSESDENYNGV--SDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMD
           260       270         280       290       300       310 

           160       170       180        190       200       210  
pF1KSD DDLIGYFSLFLVREKEDGAFSFVRKLQEFELPY-VSVTSLRSQEYKIVLRKSYWDSAYDD
       .  ..::.:: :      . ::::::   :.:. . . .  :      :    :  . ..
CCDS10 STTVNYFALFEVI-----SHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKWLFTTEE
             320            330       340       350       360      

              220       230       240       250       260       270
pF1KSD DVM--ENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYG
       ...  .: .... .. :.:.:...:.: . .:.  ::..: :. .   .: . .: . :.
CCDS10 EILLNDNDLAVTYFFHQAVDDVKKGYIKA-EEKSYQLQKLYEQRKMVMYLNMLRTCEGYN
        370       380       390        400       410       420     

              280       290       300       310         320        
pF1KSD YLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREG--SFRVTRMRCWRVTSSVP
        . :  :. :  .:   :... . ....:.      ::..   .:.  .:. :       
CCDS10 EIIFPHCACDSRRKG-HVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRW-------
         430       440        450       460       470              

      330       340       350       360       370       380        
pF1KSD LPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKS
           .:.  :       . . :::  .. . .:: : .:   .:  :.. .  ::  .: 
CCDS10 ----DTDEEG-------MAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKE
           480              490       500       510       520      

      390       400       410       420       430       440        
pF1KSD GGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDATRESMVKLSSKLSAVSLRGIGSPS
                                                                   
CCDS10 EY                                                          
                                                                   

>>CCDS81377.1 SNX27 gene_id:81609|Hs108|chr1              (541 aa)
 initn: 269 init1: 174 opt: 406  Z-score: 469.9  bits: 96.5 E(32554): 7.5e-20
Smith-Waterman score: 438; 25.8% identity (57.9% similar) in 399 aa overlap (4-397:166-533)

                                          10        20        30   
pF1KSD                            MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHC
                                     :.:.   .  ...:  .:.::... :   :
CCDS81 PPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPR--YKHVEQNGEKFVVYNVYMAGRQLC
         140       150       160         170       180       190   

            40        50        60        70        80        90   
pF1KSD RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLG
         :: ..  ::..:..:..  ..: .: :  :::.  ... ::. ::.:.. : .  ..:
CCDS81 SKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIG
           200       210       220       230       240       250   

           100       110       120       130       140       150   
pF1KSD SSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLP
        :. .. :: ..... . :   .: :.: : .:  : : :  .. :..: .:.:::. . 
CCDS81 ESDIMQEFLSESDENYNGVS--DVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMD
           260       270         280       290       300       310 

           160       170       180        190       200       210  
pF1KSD DDLIGYFSLFLVREKEDGAFSFVRKLQEFELPY-VSVTSLRSQEYKIVLRKSYWDSAYDD
       .  ..::.::     :  . ::::::   :.:. . . .  :      :    :  . ..
CCDS81 STTVNYFALF-----EVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKWLFTTEE
             320            330       340       350       360      

              220       230       240       250       260       270
pF1KSD DVM--ENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYG
       ...  .: .... .. :.:.:...:.: . .:.  ::..: :. .   .: . .: . :.
CCDS81 EILLNDNDLAVTYFFHQAVDDVKKGYIKA-EEKSYQLQKLYEQRKMVMYLNMLRTCEGYN
        370       380       390        400       410       420     

              280       290       300       310         320        
pF1KSD YLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREG--SFRVTRMRCWRVTSSVP
        . :  :. :  .:   :... . ....:.      ::..   .:.  .:. :       
CCDS81 EIIFPHCACDSRRKG-HVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRW-------
         430       440        450       460       470              

      330       340       350       360       370       380        
pF1KSD LPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKS
           .:.  :       . . :::  .. . .:: : .:   .:  :.. .  ::  .: 
CCDS81 ----DTDEEG-------MAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKE
           480              490       500       510       520      

      390       400       410       420       430       440        
pF1KSD GGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDATRESMVKLSSKLSAVSLRGIGSPS
         .: .: :                                                   
CCDS81 --NIFQMARSQQRDVAT                                           
          530       540                                            




470 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:42:13 2016 done: Wed Nov  2 23:42:14 2016
 Total Scan time:  2.900 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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