Result of FASTA (omim) for pF1KSDA0031
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0031, 972 aa
  1>>>pF1KSDA0031 972 - 972 aa - 972 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1155+/-0.000511; mu= 18.1824+/- 0.032
 mean_var=108.7841+/-21.809, 0's: 0 Z-trim(110.7): 108  B-trim: 222 in 1/53
 Lambda= 0.122968
 statistics sampled from 19067 (19172) to 19067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.225), width:  16
 Scan time: 10.210

The best scores are:                                      opt bits E(85289)
NP_001245282 (OMIM: 603892,610536) 116 kDa U5 smal ( 972) 6506 1166.3       0
NP_004238 (OMIM: 603892,610536) 116 kDa U5 small n ( 972) 6506 1166.3       0
NP_001136077 (OMIM: 603892,610536) 116 kDa U5 smal ( 937) 6265 1123.6       0
NP_001245283 (OMIM: 603892,610536) 116 kDa U5 smal ( 962) 5506 988.9       0
NP_001952 (OMIM: 130610,609306) elongation factor  ( 858) 1738 320.4 2.5e-86
NP_001332797 (OMIM: 617064,617065) translation fac ( 629)  289 63.3 4.7e-09
NP_068746 (OMIM: 617064,617065) translation factor ( 669)  289 63.3 4.9e-09
NP_733781 (OMIM: 606544) ribosome-releasing factor ( 513)  234 53.4 3.5e-06
XP_011541993 (OMIM: 606544) PREDICTED: ribosome-re ( 564)  234 53.5 3.8e-06
NP_733792 (OMIM: 606544) ribosome-releasing factor ( 732)  234 53.6 4.6e-06
NP_115756 (OMIM: 606544) ribosome-releasing factor ( 779)  234 53.6 4.8e-06
XP_016865475 (OMIM: 606544) PREDICTED: ribosome-re ( 779)  234 53.6 4.8e-06
NP_001268231 (OMIM: 606544) ribosome-releasing fac ( 811)  234 53.6 4.9e-06
XP_006713858 (OMIM: 606639,609060) PREDICTED: elon ( 712)  217 50.5 3.6e-05
NP_001295095 (OMIM: 606639,609060) elongation fact ( 591)  214 49.9 4.6e-05
NP_079272 (OMIM: 606639,609060) elongation factor  ( 751)  214 50.0 5.5e-05
NP_001295093 (OMIM: 606639,609060) elongation fact ( 770)  214 50.0 5.6e-05


>>NP_001245282 (OMIM: 603892,610536) 116 kDa U5 small nu  (972 aa)
 initn: 6506 init1: 6506 opt: 6506  Z-score: 6241.7  bits: 1166.3 E(85289):    0
Smith-Waterman score: 6506; 100.0% identity (100.0% similar) in 972 aa overlap (1-972:1-972)

               10        20        30        40        50        60
pF1KSD MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
              910       920       930       940       950       960

              970  
pF1KSD LAKQDVVLNYPM
       ::::::::::::
NP_001 LAKQDVVLNYPM
              970  

>>NP_004238 (OMIM: 603892,610536) 116 kDa U5 small nucle  (972 aa)
 initn: 6506 init1: 6506 opt: 6506  Z-score: 6241.7  bits: 1166.3 E(85289):    0
Smith-Waterman score: 6506; 100.0% identity (100.0% similar) in 972 aa overlap (1-972:1-972)

               10        20        30        40        50        60
pF1KSD MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
              910       920       930       940       950       960

              970  
pF1KSD LAKQDVVLNYPM
       ::::::::::::
NP_004 LAKQDVVLNYPM
              970  

>>NP_001136077 (OMIM: 603892,610536) 116 kDa U5 small nu  (937 aa)
 initn: 6265 init1: 6265 opt: 6265  Z-score: 6010.8  bits: 1123.6 E(85289):    0
Smith-Waterman score: 6265; 100.0% identity (100.0% similar) in 937 aa overlap (36-972:1-937)

          10        20        30        40        50        60     
pF1KSD YDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDKKY
                                     ::::::::::::::::::::::::::::::
NP_001                               MDDDDDDDDVGDHDDDHPGMEVVLHEDKKY
                                             10        20        30

          70        80        90       100       110       120     
pF1KSD YPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLADLMDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLADLMDN
               40        50        60        70        80        90

         130       140       150       160       170       180     
pF1KSD SELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTP
              100       110       120       130       140       150

         190       200       210       220       230       240     
pF1KSD VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKH
              160       170       180       190       200       210

         250       260       270       280       290       300     
pF1KSD AVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLG
              220       230       240       250       260       270

         310       320       330       340       350       360     
pF1KSD NVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSS
              280       290       300       310       320       330

         370       380       390       400       410       420     
pF1KSD QRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFG
              340       350       360       370       380       390

         430       440       450       460       470       480     
pF1KSD EFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTD
              400       410       420       430       440       450

         490       500       510       520       530       540     
pF1KSD DGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVP
              460       470       480       490       500       510

         550       560       570       580       590       600     
pF1KSD AGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLD
              520       530       540       550       560       570

         610       620       630       640       650       660     
pF1KSD GLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCET
              580       590       600       610       620       630

         670       680       690       700       710       720     
pF1KSD VVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWD
              640       650       660       670       680       690

         730       740       750       760       770       780     
pF1KSD LLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIR
              700       710       720       730       740       750

         790       800       810       820       830       840     
pF1KSD NVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSA
              760       770       780       790       800       810

         850       860       870       880       890       900     
pF1KSD VYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQ
              820       830       840       850       860       870

         910       920       930       940       950       960     
pF1KSD IVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQD
              880       890       900       910       920       930

         970  
pF1KSD VVLNYPM
       :::::::
NP_001 VVLNYPM
              

>>NP_001245283 (OMIM: 603892,610536) 116 kDa U5 small nu  (962 aa)
 initn: 5459 init1: 5459 opt: 5506  Z-score: 5283.0  bits: 988.9 E(85289):    0
Smith-Waterman score: 6401; 99.0% identity (99.0% similar) in 972 aa overlap (1-972:1-962)

               10        20        30        40        50        60
pF1KSD MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
       :::::::::::::::::::::::          :::::::::::::::::::::::::::
NP_001 DLMDNSELIRNVTLCGHLHHGKT----------HPEIRKRYDQDLCYTDILFTEQERGVG
              130       140                 150       160       170

              190       200       210       220       230       240
pF1KSD IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
              180       190       200       210       220       230

              250       260       270       280       290       300
pF1KSD RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
              240       250       260       270       280       290

              310       320       330       340       350       360
pF1KSD SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
              300       310       320       330       340       350

              370       380       390       400       410       420
pF1KSD PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
              360       370       380       390       400       410

              430       440       450       460       470       480
pF1KSD KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
              420       430       440       450       460       470

              490       500       510       520       530       540
pF1KSD MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
              480       490       500       510       520       530

              550       560       570       580       590       600
pF1KSD VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
              540       550       560       570       580       590

              610       620       630       640       650       660
pF1KSD PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
              600       610       620       630       640       650

              670       680       690       700       710       720
pF1KSD TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
              660       670       680       690       700       710

              730       740       750       760       770       780
pF1KSD KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
              720       730       740       750       760       770

              790       800       810       820       830       840
pF1KSD DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
              780       790       800       810       820       830

              850       860       870       880       890       900
pF1KSD DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
              840       850       860       870       880       890

              910       920       930       940       950       960
pF1KSD FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
              900       910       920       930       940       950

              970  
pF1KSD LAKQDVVLNYPM
       ::::::::::::
NP_001 LAKQDVVLNYPM
              960  

>>NP_001952 (OMIM: 130610,609306) elongation factor 2 [H  (858 aa)
 initn: 2117 init1: 637 opt: 1738  Z-score: 1671.0  bits: 320.4 E(85289): 2.5e-86
Smith-Waterman score: 2153; 39.2% identity (69.6% similar) in 873 aa overlap (114-954:4-856)

            90       100       110       120       130       140   
pF1KSD EDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKT
                                     . .: .  .::..  :::... .:. :::.
NP_001                            MVNFTVDQIRAIMDKKANIRNMSVIAHVDHGKS
                                          10        20        30   

           150       160       170       180                 190   
pF1KSD CFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVV----------LPDT
        ..: :. ..      :  .   .::    :::: . :::: ...           . ..
NP_001 TLTDSLVCKAGIIASARAGETR-FTDTRKDEQERCITIKSTAISLFYELSENDLNFIKQS
            40        50         60        70        80        90  

            200       210       220       230       240       250  
pF1KSD K-GKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLA
       : : ..:.:..:.::::.::.::::.::..::... .: . :: ..:: ....:. ::. 
NP_001 KDGAGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK
            100       110       120       130       140       150  

            260       270       280       290            300       
pF1KSD VTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDE-----NLILSPLLGNV
        .. .::.:: .:::.: : . :  ...::..:: .:: :.  :     :....:.::.:
NP_001 PVLMMNKMDRALLELQLEPEELYQTFQRIVENVNVIISTYGEGESGPMGNIMIDPVLGTV
            160       170       180       190       200       210  

       310       320       330            340              350     
pF1KSD CFSSSQYSICFTLGSFAKIYADTF-----GDINYQEFAKR-------LWGDIYFNPKTRK
        :.:. ..  ::: .::..:.  :     :...  : ::.       :::: ::.: . :
NP_001 GFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFDPANGK
            220       230       240       250       260       270  

         360          370       380       390       400       410  
pF1KSD FTKKAPTSSSQ---RSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNI
       :.:.: .  ..   :.: ..::.:..:..  ...       . ...: :.: .:.   . 
NP_001 FSKSATSPEGKKLPRTFCQLILDPIFKVFDAIMNFKKEETAKLIEKLDIKLDSEDKDKEG
            280       290       300       310       320       330  

            420       430       440       450       460       470  
pF1KSD RPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDG
       .:::. : ....    ....: . :.::: .. : . :  : :  :.. . ....::: :
NP_001 KPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELLYEGPPDDEAAMGIKSCDPKG
            340       350       360       370       380       390  

            480       490       500       510       520       530  
pF1KSD PLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWI
       ::: . .::  :.:  .:.:::::.:: . .:  :...: :::   .::  .  . :  .
NP_001 PLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPNYTPGKKEDLYLKPIQRTIL
            400       410       420       430       440       450  

            540       550       560       570       580       590  
pF1KSD SVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAV
        ..::   .. :: :: : . :::: .:::.:::     :.:. .: .::... :...::
NP_001 MMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTF---EHAHNMRVMKFSVSPVVRVAV
            460       470       480          490       500         

            600       610       620       630       640       650  
pF1KSD EPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEID
       :  ::..:::...::... :: : .   .::::::.: :.:::.:.  ..::.. .. : 
NP_001 EAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIP
     510       520       530       540       550       560         

            660       670       680       690       700       710  
pF1KSD IKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRK
       :: .::::.. ::: : :.. :....:::.:.. : :.:.  ::::::..  :.   . :
NP_001 IKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELK
     570       580       590       600       610       620         

            720       730       740       750       760       770  
pF1KSD KLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQW
       . ....  ::.::.  ::.:: ::::.::::::.: :   .     :. .:::.: ::::
NP_001 QRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQW
     630       640       650       660       670           680     

            780       790       800       810       820       830  
pF1KSD GTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYY
       .:.:: ::.: .:.:.: . :...  . .::::::::::::: .:.. : : :::::: :
NP_001 ATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIY
         690       700       710       720       730       740     

            840       850       860       870       880       890  
pF1KSD FVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQ
       .::.: : . :...: :: :.:::: ... . :.:....::..:. .:::: .:::..: 
NP_001 LVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTG
         750       760       770       780       790       800     

            900       910       920       930       940        950 
pF1KSD GQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV-SISK
       ::::   :: ::::.::::.:.:   ::           . . .::.::::.: . ....
NP_001 GQAFPQCVFDHWQILPGDPFDNSS--RP----------SQVVAETRKRKGLKEGIPALDN
         810       820         830                 840       850   

             960       970  
pF1KSD FFDDPMLLELAKQDVVLNYPM
       :.:                  
NP_001 FLDKL                
                            

>>NP_001332797 (OMIM: 617064,617065) translation factor   (629 aa)
 initn: 257 init1: 194 opt: 289  Z-score: 283.5  bits: 63.3 E(85289): 4.7e-09
Smith-Waterman score: 289; 37.8% identity (68.1% similar) in 135 aa overlap (127-261:66-197)

        100       110       120       130       140       150      
pF1KSD VKTKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPE
                                     : ::: .. .:. :::. ..: :.: :   
NP_001 LGAAPESWATDRLYSSAEFKEKLDMSRFPVENIRNFSIVAHVDHGKSTLADRLLELTGTI
          40        50        60        70        80        90     

        160       170       180       190       200       210      
pF1KSD IRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVT
        . . ....   : : .:.:::. .:.  ...   . .::.::.:..::::::.:: ::.
NP_001 DKTKNNKQV--LDKLQVERERGITVKAQTASLFY-NCEGKQYLLNLIDTPGHVDFSYEVS
         100         110       120        130       140       150  

        220       230       240       250       260       270      
pF1KSD AGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYY
        .:   .::.: .:: ::.. .:   .  : . .:.:   :::::               
NP_001 RSLSACQGVLLVVDANEGIQAQTVANFFLAFEAQLSVIPVINKIDLKNADPERVENQIEK
            160       170       180       190       200       210  

        280       290       300       310       320       330      
pF1KSD KLRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINY
                                                                   
NP_001 VFDIPSDECIKISAKLGTNVESVLQAIIERIPPPKVHRKNPLRALVFDSTFDQYRGVIAN
            220       230       240       250       260       270  

>>NP_068746 (OMIM: 617064,617065) translation factor GUF  (669 aa)
 initn: 257 init1: 194 opt: 289  Z-score: 283.1  bits: 63.3 E(85289): 4.9e-09
Smith-Waterman score: 289; 37.8% identity (68.1% similar) in 135 aa overlap (127-261:66-197)

        100       110       120       130       140       150      
pF1KSD VKTKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPE
                                     : ::: .. .:. :::. ..: :.: :   
NP_068 LGAAPESWATDRLYSSAEFKEKLDMSRFPVENIRNFSIVAHVDHGKSTLADRLLELTGTI
          40        50        60        70        80        90     

        160       170       180       190       200       210      
pF1KSD IRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVT
        . . ....   : : .:.:::. .:.  ...   . .::.::.:..::::::.:: ::.
NP_068 DKTKNNKQV--LDKLQVERERGITVKAQTASLFY-NCEGKQYLLNLIDTPGHVDFSYEVS
         100         110       120        130       140       150  

        220       230       240       250       260       270      
pF1KSD AGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYY
        .:   .::.: .:: ::.. .:   .  : . .:.:   :::::               
NP_068 RSLSACQGVLLVVDANEGIQAQTVANFFLAFEAQLSVIPVINKIDLKNADPERVENQIEK
            160       170       180       190       200       210  

        280       290       300       310       320       330      
pF1KSD KLRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINY
                                                                   
NP_068 VFDIPSDECIKISAKLGTNVESVLQAIIERIPPPKVHRKNPLRALVFDSTFDQYRGVIAN
            220       230       240       250       260       270  

>>NP_733781 (OMIM: 606544) ribosome-releasing factor 2,   (513 aa)
 initn: 274 init1: 163 opt: 234  Z-score: 232.0  bits: 53.4 E(85289): 3.5e-06
Smith-Waterman score: 234; 32.2% identity (57.9% similar) in 152 aa overlap (129-279:70-216)

      100       110       120       130       140       150        
pF1KSD TKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQT-HPEI
                                     :::. . .:.  :::  .. ..  . . . 
NP_733 PLGRNCSSLPGLIGNDIKSLHSIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRS
      40        50        60        70        80        90         

       160       170       180       190       200       210       
pF1KSD RKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTA
           :.    ::..  :.:::. :.:. ::    : ::  :  :..::::::.:. ::  
NP_733 LGDVDDGDTVTDFMAQERERGITIQSAAVTF---DWKG--YRVNLIDTPGHVDFTLEVER
     100       110       120       130            140       150    

       220       230       240       250       260       270       
pF1KSD GLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYK
        ::. ::.:  .::. ::  .:  . ..: .. .     .::.:.    .:    .   :
NP_733 CLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNIPRICFLNKMDKTGASFKYAVESIREK
          160       170       180       190       200       210    

       280       290       300       310       320       330       
pF1KSD LRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQ
       :.                                                          
NP_733 LKAKPLLLQLPIGEAKTFKGVVDVVMKEKLLWNCNSNDGKDFERKPLLEMNDPELLKETT
          220       230       240       250       260       270    

>>XP_011541993 (OMIM: 606544) PREDICTED: ribosome-releas  (564 aa)
 initn: 274 init1: 163 opt: 234  Z-score: 231.4  bits: 53.5 E(85289): 3.8e-06
Smith-Waterman score: 238; 23.3% identity (48.2% similar) in 533 aa overlap (129-626:70-529)

      100       110       120       130       140       150        
pF1KSD TKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQT-HPEI
                                     :::. . .:.  :::  .. ..  . . . 
XP_011 PLGRNCSSLPGLIGNDIKSLHSIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRS
      40        50        60        70        80        90         

       160       170       180       190       200       210       
pF1KSD RKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTA
           :.    ::..  :.:::. :.:. ::    : ::  :  :..::::::.:. ::  
XP_011 LGDVDDGDTVTDFMAQERERGITIQSAAVTF---DWKG--YRVNLIDTPGHVDFTLEVER
     100       110       120       130            140       150    

       220       230       240       250       260       270       
pF1KSD GLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYK
        ::. ::.:  .::. ::  .:  . ..: .. .     .::.:.         : : .:
XP_011 CLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNIPRICFLNKMDK---------TGASFK
          160       170       180       190                200     

       280       290       300       310       320       330       
pF1KSD LRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQ
                   .. :  :.:  .:::           . . .:  :: .  .  :. ..
XP_011 Y-----------AVESIREKLKAKPLL-----------LQLPIGE-AKTFKGVV-DVVMK
                    210       220                   230        240 

       340       350       360       370       380       390       
pF1KSD EFAKRLWGDIYFNPKTRKFTKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPR-TL
       :  : ::.    . :   : .:     ..  ...   :    .. ::. :.:  .   .:
XP_011 E--KLLWNCNSNDGKD--FERKPLLEMNDPELLKETTEARNALIEQVA-DLDDEFADLVL
               250         260       270       280        290      

        400          410             420         430       440     
pF1KSD DELGIH---LTKEELKLNIRPL------LRLVCKKFFGE--FTGFVDMCVQHIPSPKVGA
       .:.. .   :  :.:.  :. .      . ..: . . .  .  ..:  ....:::.   
XP_011 EEFSENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPE---
        300       310       320       330       340       350      

         450       460       470       480       490       500     
pF1KSD KPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQ
           :..:         : ..    :   .:  .     :      .: :. ::::.   
XP_011 ----ERNY---------EFLQWYKDD---LCALAFKVLHDKQRGPLVFMRIYSGTIKPQL
                        360          370       380       390       

         510       520         530       540       550             
pF1KSD PVKVLGENYTLEDEEDSQICT--VGRLWISVARYHIEVNRVPAGNWVLIEGVDQP-----
        .. .. :           ::  ..:: .  :  :.:.  . ::: .:  :. .      
XP_011 AIHNINGN-----------CTERISRLLLPFADQHVEIPSLTAGNIALTVGLKHTATGDT
       400                  410       420       430       440      

      560         570       580       590                   600    
pF1KSD IV--KTATITEPRGNEEAQIFRPLKFNTTSVIKIA------------VEPVNPSELPKML
       ::  :.....  :  :.    .  . : .  . .:            .:: . :. : . 
XP_011 IVSSKSSALAAARRAEREGEKKHRQNNEAERLLLAGVEIPEPVFFCTIEPPSLSKQPDLE
        450       460       470       480       490       500      

          610       620        630       640       650       660   
pF1KSD DGLRKVNKSYPSLTTKVE-ESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFC
        .:. ...  ::: .... .::.                                     
XP_011 HALKCLQREDPSLKVRLDPDSGQAPPRSCPHQLYSSSIGQKFGFAVGKCWYLAKCWHH  
        510       520       530       540       550       560      

>>NP_733792 (OMIM: 606544) ribosome-releasing factor 2,   (732 aa)
 initn: 349 init1: 163 opt: 234  Z-score: 229.9  bits: 53.6 E(85289): 4.6e-06
Smith-Waterman score: 307; 22.7% identity (47.3% similar) in 807 aa overlap (129-910:70-720)

      100       110       120       130       140       150        
pF1KSD TKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQT-HPEI
                                     :::. . .:.  :::  .. ..  . . . 
NP_733 PLGRNCSSLPGLIGNDIKSLHSIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRS
      40        50        60        70        80        90         

       160       170       180       190       200       210       
pF1KSD RKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTA
           :.    ::..  :.:::. :.:. ::    : ::  :  :..::::::.:. ::  
NP_733 LGDVDDGDTVTDFMAQERERGITIQSAAVTF---DWKG--YRVNLIDTPGHVDFTLEVER
     100       110       120       130            140       150    

       220       230       240       250       260       270       
pF1KSD GLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYK
        ::. ::.:  .::. ::  .:  . ..: .. .     .::.:.         : : .:
NP_733 CLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNIPRICFLNKMDK---------TGASFK
          160       170       180       190                200     

       280       290       300       310       320       330       
pF1KSD LRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQ
                   .. :  :.:  .:::           . . .:  :: .  .  :. ..
NP_733 Y-----------AVESIREKLKAKPLL-----------LQLPIGE-AKTFKGVV-DVVMK
                    210       220                   230        240 

       340       350       360       370       380       390       
pF1KSD EFAKRLWGDIYFNPKTRKFTKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLD
       :  : ::.    . :   : .:     ..  ...   :    .. ::. :.:       :
NP_733 E--KLLWNCNSNDGKD--FERKPLLEMNDPELLKETTEARNALIEQVA-DLD-------D
               250         260       270       280                 

       400       410       420       430       440       450       
pF1KSD ELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGV
       :..                 :: ..:  .:    :.    .:. :.  .  : :  :   
NP_733 EFA----------------DLVLEEFSENF----DL----LPAEKL--QTAI-HRVT---
     290                       300               310               

       460       470       480       490        500       510      
pF1KSD DSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSG-TIHAGQPVKVLGENYTL
          :...        :..: ..     . :.:      .:.. :..  .: .   .:: .
NP_733 ---LAQTAV------PVLCGSAL---KNKGIQ-----PLLDAVTMYLPSPEE---RNYEF
        320             330               340       350            

        520       530       540       550            560           
pF1KSD EDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQP-----IV--KTATITEPR
        ..       ..:: .  :  :.:.  . ::: .:  :. .      ::  :.....  :
NP_733 LER-------ISRLLLPFADQHVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAAR
     360              370       380       390       400       410  

     570       580       590                   600       610       
pF1KSD GNEEAQIFRPLKFNTTSVIKIA------------VEPVNPSELPKMLDGLRKVNKSYPSL
         :.    .  . : .  . .:            .:: . :. : .  .:. ...  :::
NP_733 RAEREGEKKHRQNNEAERLLLAGVEIPEPVFFCTIEPPSLSKQPDLEHALKCLQREDPSL
            420       430       440       450       460       470  

       620        630       640       650       660       670      
pF1KSD TTKVE-ESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFA
        .... .::. :. : :::... ..::  ..  :  .          :: .         
NP_733 KVRLDPDSGQTVLCGMGELHIE-IIHD--RIKREYGL----------ETYL---------
            480       490          500                 510         

        680       690       700       710       720       730      
pF1KSD ETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFG
                     ::. .  : : : :       . ::       :   :..  . :  
NP_733 -------------GPLQVAYRETILNSVRATDTLDRTLG-------DKRHLVTVEVEARP
                           520       530              540       550

        740       750       760       770       780       790      
pF1KSD PDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVV
        ....   ...      ....::   ...: .:.. .  .:::    :..: . . . ..
NP_733 IETSSVMPVIEFEYAESINEGLLKVSQEAIENGIHSACLQGPLLGSPIQDVAITLHSLTI
              560       570       580       590       600       610

        800       810         820       830       840       850    
pF1KSD AQEPLHRGGGQIIPTA--RRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRR
            : : .  . .:   : : .:.  :  ...:: . .:: .  : .: : . ::.::
NP_733 -----HPGTSTTMISACVSRCVQKALKKADKQVLEPLMNLEVTVARDYLSPVLADLAQRR
                   620       630       640       650       660     

          860       870       880       890        900       910   
pF1KSD GHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQA-FSLSVFHHWQIVPGDPLD
       :.. .      . .  . .:.:  . .:. : ::: :.:.: :.: .  .  . : :   
NP_733 GNIQEIQTRQDNKV--VIGFVPLAEIMGYSTVLRTLTSGSATFALELSTYQAMNPQDQNT
         670         680       690       700       710       720   

           920       930       940       950       960       970  
pF1KSD KSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQDVVLNYPM
                                                                  
NP_733 LLNRRSGLT                                                  
           730                                                    




972 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:28:48 2016 done: Wed Nov  2 23:28:49 2016
 Total Scan time: 10.210 Total Display time:  0.230

Function used was FASTA [36.3.4 Apr, 2011]
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