hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/Pfam.bin
Sequence file: /tmp/20080305/iprscan-20080305-00095725/chunk_1/iprscan-20080305-00095725.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: pF1KSDA0024
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF03034.6.fs Phosphatidyl serine synthase 753.8 6e-237 1
PF03034.6.ls Phosphatidyl serine synthase 755.6 2.9e-224 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF03034.6.fs 1/1 96 374 .. 1 310 [] 753.8 6e-237
PF03034.6.ls 1/1 96 374 .. 1 310 [] 755.6 2.9e-224
Alignments of top-scoring domains:
PF03034.6.fs: domain 1 of 1, from 96 to 374: score 753.8, E = 6e-237
*->PHPAlWRivFGvSVvYllfLqFlLFQtfdDirqflkWLDPkLggave
PHPAlWR+vFG+SV+Y+lfL+FlLF++f++++++++WLDP+L++a++
pF1KSDA002 96 PHPALWRMVFGLSVLYFLFLVFLLFLNFEQVKSLMYWLDPNLRYATR 142
LpEkmEYgvNCsiispdrkTdrFkNLiwshlDiFafaHFtGWamKALLIR
+++ mEY+vNC++i+++r i+sh+DiFaf+HF+GWamKALLIR
pF1KSDA002 143 EADVMEYAVNCHVITWER--------IISHFDIFAFGHFWGWAMKALLIR 184
hwvLCWvISImWEltEltFeHLLPNFaECWWDsiILDVLiCNGlGIwaGM
+++LCW+ISI+WEltEl+F+HLLPNFaECWWD++ILD+L+CNG+GIw+GM
pF1KSDA002 185 SYGLCWTISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGM 234
kicrfLemRtYhWeSIknIpTtrGKiKRavlQFTPaSWskfeWkdskSPa
++crfLemRtYhW+S+k+I+Tt+GKiKRavlQFTPaSW++++W+d P+
pF1KSDA002 235 VVCRFLEMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFD---PK 281
sslkRfaaVyllviiWLPPPikRLnFknCDtAHFFqLtELNTFFLKHvfw
ss++R+a+Vyl++iiW+ LtELNTFFLKH+f+
pF1KSDA002 282 SSFQRVAGVYLFMIIWQ-------------------LTELNTFFLKHIFV 312
ippkHPvVlwRLIlialIaAPtvRqyYvYltDlkpcKRVGtQCWVflaIc
++++HP++++R+++i+ I+APtvRqyY+YltD ++cKRVGtQCWVf++I+
pF1KSDA002 313 FQASHPLSWGRILFIGGITAPTVRQYYAYLTD-TQCKRVGTQCWVFGVIG 361
vlEllICvKfGsh<-*
+lE+++C+KfG++
pF1KSDA002 362 FLEAIVCIKFGQD 374
PF03034.6.ls: domain 1 of 1, from 96 to 374: score 755.6, E = 2.9e-224
*->PHPAlWRivFGvSVvYllfLqFlLFQtfdDirqflkWLDPkLggave
PHPAlWR+vFG+SV+Y+lfL+FlLF++f++++++++WLDP+L++a++
pF1KSDA002 96 PHPALWRMVFGLSVLYFLFLVFLLFLNFEQVKSLMYWLDPNLRYATR 142
LpEkmEYgvNCsiispdrkTdrFkNLiwshlDiFafaHFtGWamKALLIR
+++ mEY+vNC++i+++r i+sh+DiFaf+HF+GWamKALLIR
pF1KSDA002 143 EADVMEYAVNCHVITWER--------IISHFDIFAFGHFWGWAMKALLIR 184
hwvLCWvISImWEltEltFeHLLPNFaECWWDsiILDVLiCNGlGIwaGM
+++LCW+ISI+WEltEl+F+HLLPNFaECWWD++ILD+L+CNG+GIw+GM
pF1KSDA002 185 SYGLCWTISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGM 234
kicrfLemRtYhWeSIknIpTtrGKiKRavlQFTPaSWskfeWkdskSPa
++crfLemRtYhW+S+k+I+Tt+GKiKRavlQFTPaSW++++W+d P+
pF1KSDA002 235 VVCRFLEMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFD---PK 281
sslkRfaaVyllviiWLPPPikRLnFknCDtAHFFqLtELNTFFLKHvfw
ss++R+a+Vyl++iiW+ LtELNTFFLKH+f+
pF1KSDA002 282 SSFQRVAGVYLFMIIWQ-------------------LTELNTFFLKHIFV 312
ippkHPvVlwRLIlialIaAPtvRqyYvYltDlkpcKRVGtQCWVflaIc
++++HP++++R+++i+ I+APtvRqyY+YltD ++cKRVGtQCWVf++I+
pF1KSDA002 313 FQASHPLSWGRILFIGGITAPTVRQYYAYLTD-TQCKRVGTQCWVFGVIG 361
vlEllICvKfGsh<-*
+lE+++C+KfG++
pF1KSDA002 362 FLEAIVCIKFGQD 374
//