Result of GENSCAN for pF1KSDA0007
GENSCAN 1.0	Date run:  2-Nov-116	Time: 23:18:38

Sequence gi568815596f:28794699_29046776 : 252078 bp : 43.85% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 PlyA -     72     67    6                               1.05
 1.01 Sngl -  16803  16129  675  0  0   56   45   194 0.961   8.09
 1.00 Prom -  21255  21216   40                              -3.16

 2.07 PlyA -  21291  21286    6                               1.05
 2.06 Term -  45610  45566   45  1  0  105   43    41 0.087  -1.49
 2.05 Intr -  55658  55630   29  0  2   43  109    36 0.176  -0.97
 2.04 Intr -  56574  56374  201  1  0   23   89   120 0.297   4.86
 2.03 Intr -  70421  70319  103  2  1   74  110    18 0.246   2.35
 2.02 Intr -  75712  74881  832  0  1   73   90   208 0.295  10.90
 2.01 Init -  80757  80612  146  0  2   35   80   143 0.835   7.79
 2.00 Prom -  90034  89995   40                              -5.96

 3.00 Prom +  95129  95168   40                              -8.06
 3.01 Init + 100001 100225  225  1  0  102   98   276 0.823  26.47
 3.02 Intr + 107289 107426  138  2  0  127   92     2 0.854   5.16
 3.03 Intr + 111762 111883  122  2  2  106   89     3 0.031   1.49
 3.04 Intr + 117892 118012  121  1  1   32   84    52 0.026  -0.30
 3.05 Intr + 119371 119510  140  0  2   78   84    60 0.938   3.86
 3.06 Intr + 130284 130455  172  0  1  117   76    30 0.788   4.65
 3.07 Intr + 132871 133002  132  0  0   80   80    65 0.941   5.74
 3.08 Intr + 134881 135012  132  0  0  100  101    31 0.969   6.44
 3.09 Intr + 140823 140909   87  2  0  111   78     7 0.708   2.17
 3.10 Intr + 147614 147683   70  1  1   93   98    62 0.944   6.45
 3.11 Intr + 151752 151801   50  1  2  103   81    96 0.949   8.80
 3.12 Term + 151902 152081  180  2  0   60   49   391 0.999  30.01
 3.13 PlyA + 152273 152278    6                               1.05

 4.00 Prom + 153444 153483   40                              -0.36
 4.01 Init + 161842 161999  158  0  2   57   94    77 0.337   4.04
 4.02 Intr + 164574 164683  110  0  2   58   -5    92 0.016  -3.17
 4.03 Intr + 173749 173877  129  2  0  129   98   -44 0.018   1.37
 4.04 Intr + 186558 186707  150  1  0   83   44   111 0.028   6.33
 4.05 Intr + 192903 193114  212  1  2   26   63    99 0.008  -0.17
 4.06 Intr + 200134 200164   31  0  1   73  116    59 0.197   4.90
 4.07 Intr + 203445 203555  111  1  0  101  100   101 0.768  12.95
 4.08 Intr + 204483 204770  288  1  0  112   83   204 0.988  19.52
 4.09 Intr + 207838 208049  212  2  2   85   94   102 0.950   9.13
 4.10 Intr + 208794 208984  191  2  2   91   95    60 0.469   5.38
 4.11 Intr + 212330 212463  134  2  2  114   92   -29 0.247   0.39
 4.12 Intr + 219697 219863  167  2  2   91   77   166 0.048  15.48
 4.13 Intr + 222456 222606  151  2  1   21   79   189 0.987  11.04
 4.14 Intr + 223094 223258  165  0  0  100   80    88 0.990   9.13
 4.15 Intr + 226555 226646   92  2  2   70   30    57 0.390  -2.19
 4.16 Intr + 228368 228493  126  1  0   85   78   114 0.721  10.98
 4.17 Intr + 229441 229676  236  0  2   49   41   377 0.911  25.59
 4.18 Intr + 232155 232313  159  0  0   87   91   255 0.988  24.80
 4.19 Intr + 238236 238353  118  0  1   94   99   146 0.995  16.77
 4.20 Intr + 238771 238865   95  0  2   66   39   163 0.993   7.96
 4.21 Intr + 240766 240958  193  1  1   73   99   277 0.988  26.79
 4.22 Intr + 241843 242059  217  0  1  103   92   290 0.787  28.98
 4.23 Intr + 250626 250712   87  1  0  106   99    -7 0.098   2.14

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 117950 118012   63  1  0   67   84    55 0.882   4.15
S.002 Init - 215198 215091  108  2  0   82   90   135 0.917  11.35
S.003 Init + 218281 218333   53  0  2   96   94    69 0.940   7.10


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:28794699_29046776|GENSCAN_predicted_peptide_1|224_aa
MSYGPGTETQQLRSQNSGADDLGDKKRCLMGHKEVGFIKKTPQISIPPTIKAAGTRGDGS
ACPGPSLRADGRASGAASGIGPARPSPGTFTRYAAGRRAAKAPTCAATASLARSLSPEPA
AGSACVVAAKAAEGAHGRRREDEAGALPSHLRRAVGSPASEPRDRAHSKLEIRLRGPFPG
ASTGTCGSPGLRGRGPGNGGQGSVAALLASDGCSSVASQQRYPL

>gi568815596f:28794699_29046776|GENSCAN_predicted_CDS_1|675_bp
atgagctacgggcctggtactgagacacagcagctcagatctcaaaattctggggcagac
gatcttggggacaaaaagaggtgtttaatgggacataaggaggtaggatttatcaaaaag
accccccaaatctccattcctcccacaataaaggcggcaggcacacgtggagacgggagc
gcctgcccagggccctccctccgagcagacggccgagcttcgggagcagcctccggtatc
ggccctgcccgtccttcccctggaaccttcacccgctacgccgccgggcggagggcggcc
aaagccccaacctgcgcggccactgcctccctcgccaggtccctcagcccagagcccgct
gcggggagcgcgtgtgtcgtcgccgcgaaggcagctgagggcgcccacgggaggcggcgt
gaggacgaggctggagcgctgccttctcatctaaggcgggcggtggggtcgccggcgagc
gaacccagggaccgggcacactcgaaactggagattcgcctgcgaggccccttcccgggg
gcgagcacaggtacctgcggaagcccggggctgcgcgggagagggccgggcaacggcggt
caaggctccgtcgcagcgctcctggcctcagacggttgctcgtcggtcgctagccagcag
cggtacccgctctaa

>gi568815596f:28794699_29046776|GENSCAN_predicted_peptide_2|451_aa
MFEKVLNFSEFGFAVSSNTAVNPRGEVLQNPDSSLAATGDKVKKQEKSRRSRGAVEPHAA
AEPSGCCAMRATGKEGVALGLRHSSATAPSRNTMLMAWCRGPVLLCLRQGLGTNSFLHGL
GQEPFEGARSLCCRSSPRDLRDGEREHEAAQRKAPGAESCPSLPLSISDIGTGCLSSLEN
LRLPTLREESSPRELEDSSGDQGRCGPTHQGSEDPSMLSQAQSATEVEERHVSPSCSTSR
ERPFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGAVPFGKIVGKFPGQILRSSFGK
QYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKA
DGIRTCELALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQEKIGVKGE
LFQEDDHDQYTGNLVIQSEQSTGVALGPRGS

>gi568815596f:28794699_29046776|GENSCAN_predicted_CDS_2|1356_bp
atgtttgagaaggttttaaacttctctgaatttggatttgcagtttctagtaacacagca
gtaaatcctagaggagaagttctacagaatccagattcaagtttagcagcaactggggat
aaagtgaaaaagcaggagaaaagcaggcgcagtcgcggagctgtagagccccacgcagct
gcagagccatcgggctgctgcgccatgcgcgcgactgggaaagaaggggtcgcgctaggc
ttgcgtcactcgtctgcgacggcgccttcgcgaaacactatgctaatggcatggtgccgc
ggtcctgtcttgctgtgcctgcggcaggggctcggaaccaattcattcctgcacggcctg
gggcaggagcccttcgagggagctcggtcactgtgttgcaggtcctcgcctagagacctg
cgagatggagaaagagagcacgaggcggcacaaaggaaagccccaggagcagagtcttgc
ccatctctccctctgagcatctcggacattgggactggatgtctttcgtcactggaaaac
ctcagactgccgacgctgcgggaagagtcatcccctcgagagctcgaggactcgagcgga
gaccagggccggtgcggtcccacacaccagggatccgaggatccttcgatgctctcgcag
gcccagtccgctaccgaggtcgaagagcgtcacgtctccccttcttgttcaacttccaga
gagagaccctttcaggctggggaactgattttagctgagactggggagggagaaacaaaa
tttaagaaattatttaggttgaacaacttcggactcttaaatagtaactggggggcagtc
ccgttcggcaagatcgtggggaagttccccggccagatactgaggagttccttcggtaag
cagtacatgctgaggaggccagccttggaagactatgtagtattgatgaaaagagggact
gccataacattcccaaaggatattaatatgattctctcaatgatggatatcaacccaggt
gatactgttttggaagctggctcaggctctggtggaatgagcttatttttatccaaagca
gatggaattcgcacctgtgaacttgctctttcatgtgaaaagataagcgaggtcattgtc
agagattggttggtttgccttgcaaaacagaaaaatggaattttagctcaaaaagtagaa
tctaaaatcaacacagatgtacaactagattctcaagagaaaattggagttaaaggtgag
ctgtttcaagaggatgaccatgaccagtacactggcaacctggtcatacagagtgaacaa
tctactggtgtggcactaggtccccggggcagctga

>gi568815596f:28794699_29046776|GENSCAN_predicted_peptide_3|522_aa
MAAGGGGSCDPLAPAGVPCAFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSAHLSG
TCTCLAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKL
ISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDG
KMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGA
VHDRLLNVWYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMSLLLVYGSWFQ
PTIERVVRTPVMNSEAKVLVPGIPGHHAAIKPAPPQTEQVESKRKSGGNEVSIEERLGAM
DIDTHKKGKEDLQTNSFPVLLTQGLESNDFEMLNKVLQTRNVNLIKKTVLRMPLHTIIPL
LQEVTASEKTKGATSPGQKAKLVYEEESSEEESDDEIADKDSEDNWDEDEEESESEKDED
VEEEDEDAEGKDEENGEDRDTASEKELNGDSDLDPENESEEE

>gi568815596f:28794699_29046776|GENSCAN_predicted_CDS_3|1569_bp
atggcggcgggcggcggcggtagctgcgaccccctggcccctgctggggtcccttgcgcc
ttctccccgcacagccaggcctacttcgctttggcctctaccgacggtcacttacgagta
tgggagacggccaacaaccggctgcaccaggagtacgtgccttccgcgcacctcagtggt
acctgcacctgtctggcctgggcgccagcgcggctgcaggccaaggaaagtccccagagg
aaaaaaaggaaatcagaagctgtaggaatgagtaaccagactgacttattggctcttggc
acagcagttggtagcattttattatacagcacagtaaaaggagagttacacagtaaatta
ataagtggtggacatgacaacagagtcaactgcatacagtggcatcaagacagtggctgt
ttatatagttgttcagatgataaacatattgtggaatggaacgtacagacatgcaaagta
aagtgcaaatggaaaggcgacaatagcagtgtcagttccctatgtatcagcccagatgga
aagatgttgctttcagctggtcgaacaatcaaactatgggttttggagaccaaagaagtc
tacaggcatttcacaggacatgcaacgccagtttcgtcactgatgttcactaccatcaga
cctcctaatgagagccagccctttgatggaattacaggtctttatttcttatctggagca
gtacatgaccggttacttaatgtctggtactgcaaaaagcctttgacttcaaactgcaca
attcagatagcaacacctgggaaaggcaagaagtcaacaccaaaacccatccctattcta
gctgctggtttttgctcagacaaaatgtcattgttgcttgtatatggcagttggtttcag
cctactattgagcgagtggtgaggacaccagtgatgaattctgaagcaaaagttctggtg
cctgggattcctggtcatcatgcagctatcaagcccgctcctccacaaaccgagcaagta
gagagcaagaggaagtcagggggaaatgaggttagcattgaagaacgtctgggagcaatg
gatatagacacacacaaaaaaggaaaggaagacctccagacgaatagctttccagttctt
cttacccagggcttagaaagtaacgattttgaaatgctaaataaagtacttcaaactagg
aatgtaaaccttataaagaagactgtattaaggatgcccctgcatactattattccgttg
ttacaagaggtaacagcatcagagaagacaaagggagcaacttcccctggacagaaggca
aagttggtgtatgaagaagagtcttctgaagaggagtctgatgatgaaatagcagataag
gattctgaagataattgggatgaagatgaggaggagagtgaaagtgaaaaagatgaggac
gttgaagaggaagatgaggatgccgaaggaaaagatgaagaaaatggcgaggacagagat
acagcaagtgaaaaagaattaaatggagattctgatttagatcctgaaaatgaaagtgaa
gaagaatga

>gi568815596f:28794699_29046776|GENSCAN_predicted_peptide_4|1178_aa
MLLLLLCYGCASENHCCHSLIDRCLGCFLFLSKVKLRRPRACLMCTCASIFLSEVIAKIR
KKLTTSYTNCINFPIDFVHEIQEFTYVNDTEVVHFLSVSVGCNEAILVLYTFVLFLAPIC
TLGKVCMTLGGQGSYGLLQRVVAMQPCLFKESFAESWSTPAVELVATQPLLRQEAAAQDC
VAVLNSFIQSHYSYCIIAMNLALFVPLSAFCGIAGWLHPILSENRVATGVLTPPDLTMGE
ETPSAAVVVDPELDMGTRDDVPEAKVLVPVAVYCGSIPRTSAGPRVLPPGSINSSLPHGE
GSLQPEPRALLNNEEPSQLLRGLGQLGGLKLDTPSKGWQARNGHPRNLRALSLGDQPLVL
LPSPESEANSVARDTIQIKDKLKKRRLSEGLAASSRASLDPGGGPQGVPLHSTIPRATSQ
RLLRVPRPMPLIQSIPTTPEASGVKEKGLDLPGSIPGPHELRPGAQEAQISWQYLHCNDE
KMQKSLGAIVIPPIPKARTVAATPSRVPGSLPSPLPPGQGVLTGLRAPRTRQLPVCPLPF
LSSAIPKIVPGLFAPISCFLLGPLCVPKSSRWWNVEPKPLASPIRDRPAAAKKPALPFSQ
SAPTLTAFSFDCAREACPPLKEEDQKEIGTKIQVTISKSAREKMQLKQMKEMELLRRLEE
PRTGQELTSQCLGSQRAFMKEGLLPLRGSGTLSVPTRLSGPCRNDVSIILRKWASRASLP
SIPISRQEPRFARHASDLPRTSRCTVVKIILVEVKLGRKLARKEDVVGLALLLRQMKEKG
LVSIQRLAACHSEVLTGKLHDVCLVVTGEVTNLRSKVSHLAISTLGDLFQALKKNMDQEA
EEIARCLLQKMADTNEFIQRAAGQSLRAMVENVTLARSLVVLTSAGVYHRNPLIRKYAAE
HLSAVLEQIGAEKLLSGTRDSTDMLVHNLVRLAQDSNQDTRFYGRKMVNILMANTKFDAF
LKQSLPSYDLQKVMAAIKQQGIEDNDELPSAKGRKVLRSLVVCENGLPIKEGLSCNGPRL
VGLRSTLQGRGEMVEQLRELTRLLEAKDFRSRMEGVGQLLELCKAKTELVTAHLVQVFDA
FTPRLQDSNKKVNQWALESFAKMIPLLRESLHPMLLSIIITVADNLNSKNSGIYAAAVAV
LDAMVESLDNLCLLPALAGRVRFLSGRAVLDVTDRLAX

>gi568815596f:28794699_29046776|GENSCAN_predicted_CDS_4|3534_bp
atgctgctgctgctgctgtgttacggctgcgcttcggagaaccactgctgccattccctg
atcgatagatgcttggggtgcttcctgtttctcagtaaagtgaagttgcggcgacctcgt
gcctgccttatgtgcacctgtgccagcatctttctcagtgaagtaatagccaaaataaga
aagaaattaaccacatcatacaccaactgcatcaatttccccatagactttgtccatgaa
atccaggagtttacatatgtcaatgatacggaggttgtccatttcctcagtgtgtctgtt
ggttgcaatgaggccatcttggtcctttacacctttgtccttttcctcgcacccatatgc
accctaggaaaagtgtgcatgactttgggaggccaagggagctatgggctccttcagcga
gtggttgctatgcagccttgtttattcaaggagagctttgctgagagctggagcacgcca
gcagtggagctcgtggccacccagcccctgctcagacaggaggctgcggcccaggactgt
gtggctgttttgaattcattcattcagtcacactacagttactgcattattgccatgaac
ctggcactgtttgtccctttgtctgcattctgtggaattgctggctggctgcaccctata
ttgtctgagaacagagtggctacaggagtattaaccccacctgatctcacgatgggagag
gagacgccatctgcagcagtggtggtagacccagagctggacatgggcacccgtgacgat
gtccccgaagccaaggtcctggtccccgtggccgtgtactgcgggagcatccctcggacc
agtgctgggccccgggtgctcccgcctggaagcatcaactccagtctgcctcatggagaa
ggttctctccagcctgagccaagagccctgctgaacaacgaggaaccgtcacagctcctg
cgtggactcggacagctgggtggcctcaagctggacaccccttccaagggctggcaggca
aggaatggtcaccccaggaacctcagggccttgtctttgggggaccagcccctggtgctc
ctcccttctccggagtcagaggccaacagcgtggccagggacaccatccagattaaggac
aagctcaagaaaaggaggctctcagagggcttggcagcgtcttcccgagcctctctggat
ccagggggaggcccccaaggagttcccctgcacagcaccatcccccgagccacctctcag
aggctgctgagggtgcccaggccgatgcctctcatccagagcatccctaccacccctgag
gccagcggagtcaaagagaagggcctggacctaccggggagcattccgggtcctcacgag
ttgagacccggtgctcaggaggcgcagatctcctggcaatacctgcactgcaatgatgag
aagatgcagaagtccctgggcgccatcgtgatcccacccatcccaaaggccaggacggtt
gcagcgaccccctcccgtgtgcctggctcccttcccagcccgttacctccaggccaggga
gtcctcacaggcctgagggccccacgcacgcggcagcttcctgtgtgccctcttccattt
ctaagttctgccattcccaaaattgttccaggactgtttgcccccatctcctgttttctc
ctggggcccttatgtgtgcccaagtcttccagatggtggaatgtggagccaaaacctttg
gcctcacccatcagagacaggcctgccgctgccaagaagcctgccctgcctttttctcag
tctgctcccacgctgacagccttctcctttgactgtgccagagaagcctgccctccgctg
aaagaagaggaccagaaggagatcggcaccaagatccaagtcaccatctccaagtctgcc
cgggagaagatgcagctgaagcagatgaaggagatggagctgcttcggaggctggaggag
cccaggacagggcaggagctcacttcccagtgcctgggctcccagagagccttcatgaag
gaaggcctccttcccctccggggcagcgggacactgtctgtgcccactaggctgagcggc
ccatgcagaaacgacgtcagcatcatcctgaggaagtgggccagccgggcctccctgccc
agcatccccatcagccggcaggagccccgctttgcccgccacgcctcagacttgcctagg
acctccagatgtactgtggtgaaaatcatcctggtggaggtgaagctcgggagaaaactc
gccaggaaggaagatgtggtaggcctggccttgcttctcaggcagatgaaggagaagggt
ctggtgagcatccagcgcttggcagcctgtcactcagaggtcctcaccgggaagctgcac
gacgtgtgcttggtggtgactggggaggtcaccaacctgcggtccaaggtgtctcacctg
gccatcagcaccttgggagacctcttccaggccttgaagaagaatatggaccaggaggcc
gaggagatcgcccgctgcttgctgcagaagatggcggacaccaacgagttcatccagaga
gcagccggccagtctctgagggctatggtggagaatgtgacccttgcccgctccctggtg
gtcctcacctcggcgggtgtctaccaccggaaccccttgatccggaaatacgcggctgag
cacctctcagctgtgctggagcagatcggcgctgagaagcttctctcgggcaccagagac
agcacagacatgttggtgcacaacctggtgaggctggcacaggactccaaccaggacacc
agattttatggccggaagatggtgaatatcttgatggcgaacactaagtttgatgcattt
ctgaagcaatctctcccatcttacgacttgcagaaggtcatggcggccattaaacagcag
ggaatagaagataatgatgaacttccctctgccaaaggccgcaaggtgttgaggagtctg
gtggtgtgtgagaacgggctgcccatcaaggaggggctcagctgcaatggcccaaggctg
gtggggctgcgctccacactgcagggccgcggggagatggtggagcagctacgggagctg
acacggctgctggaggccaaggacttccggtcccggatggaaggcgtggggcagctcctg
gagctctgcaaggccaagacggagcttgtcactgcccacctggtccaggtctttgatgct
ttcaccccaaggcttcaggattccaacaagaaagtgaaccagtgggcgctggagtccttc
gccaagatgatccccctcctcagagagagcttacaccccatgctgctctccatcatcatc
actgttgcagacaacctcaactccaagaactcagggatttacgctgctgccgtggctgtg
ctggatgcgatggttgagagcctggacaacctttgccttctaccagcgcttgctgggcga
gtgcgtttcctgagtggccgtgcggtgctggatgtcacagatcgcctggcagnn
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