Result of FASTA (omim) for
pF1KA1795
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1795, 433 aa
1>>>pF1KA1795 433 - 433 aa - 433 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9732+/-0.000349; mu= 0.4991+/- 0.022
mean_var=167.6984+/-34.295, 0's: 0 Z-trim(119.8): 13 B-trim: 374 in 1/57
Lambda= 0.099040
statistics sampled from 34148 (34161) to 34148 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.401), width: 16
Scan time: 9.780
The best scores are: opt bits E(85289)
NP_001164236 (OMIM: 607698) ligand-dependent corep ( 433) 2839 417.5 3.4e-116
XP_016872277 (OMIM: 607698) PREDICTED: ligand-depe ( 433) 2839 417.5 3.4e-116
XP_016872276 (OMIM: 607698) PREDICTED: ligand-depe ( 433) 2839 417.5 3.4e-116
XP_016872275 (OMIM: 607698) PREDICTED: ligand-depe ( 433) 2839 417.5 3.4e-116
NP_115816 (OMIM: 607698) ligand-dependent corepres ( 433) 2839 417.5 3.4e-116
XP_016872274 (OMIM: 607698) PREDICTED: ligand-depe ( 558) 2839 417.5 4.3e-116
XP_016872273 (OMIM: 607698) PREDICTED: ligand-depe ( 575) 2839 417.5 4.4e-116
XP_006718096 (OMIM: 607698) PREDICTED: ligand-depe ( 593) 2839 417.5 4.5e-116
NP_001164237 (OMIM: 607698) ligand-dependent corep ( 406) 2655 391.2 2.7e-108
XP_011538579 (OMIM: 607698) PREDICTED: ligand-depe ( 272) 717 114.2 4.2e-25
NP_001333445 (OMIM: 607698) ligand-dependent corep (1557) 717 114.5 2e-24
XP_016863453 (OMIM: 611799) PREDICTED: ligand-depe ( 442) 389 67.4 8.4e-11
NP_001159611 (OMIM: 611799) ligand-dependent nucle ( 602) 389 67.4 1.1e-10
>>NP_001164236 (OMIM: 607698) ligand-dependent corepress (433 aa)
initn: 2839 init1: 2839 opt: 2839 Z-score: 2207.0 bits: 417.5 E(85289): 3.4e-116
Smith-Waterman score: 2839; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433)
10 20 30 40 50 60
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
370 380 390 400 410 420
430
pF1KA1 GEAAQSANESKNE
:::::::::::::
NP_001 GEAAQSANESKNE
430
>>XP_016872277 (OMIM: 607698) PREDICTED: ligand-dependen (433 aa)
initn: 2839 init1: 2839 opt: 2839 Z-score: 2207.0 bits: 417.5 E(85289): 3.4e-116
Smith-Waterman score: 2839; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433)
10 20 30 40 50 60
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
370 380 390 400 410 420
430
pF1KA1 GEAAQSANESKNE
:::::::::::::
XP_016 GEAAQSANESKNE
430
>>XP_016872276 (OMIM: 607698) PREDICTED: ligand-dependen (433 aa)
initn: 2839 init1: 2839 opt: 2839 Z-score: 2207.0 bits: 417.5 E(85289): 3.4e-116
Smith-Waterman score: 2839; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433)
10 20 30 40 50 60
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
370 380 390 400 410 420
430
pF1KA1 GEAAQSANESKNE
:::::::::::::
XP_016 GEAAQSANESKNE
430
>>XP_016872275 (OMIM: 607698) PREDICTED: ligand-dependen (433 aa)
initn: 2839 init1: 2839 opt: 2839 Z-score: 2207.0 bits: 417.5 E(85289): 3.4e-116
Smith-Waterman score: 2839; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433)
10 20 30 40 50 60
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
370 380 390 400 410 420
430
pF1KA1 GEAAQSANESKNE
:::::::::::::
XP_016 GEAAQSANESKNE
430
>>NP_115816 (OMIM: 607698) ligand-dependent corepressor (433 aa)
initn: 2839 init1: 2839 opt: 2839 Z-score: 2207.0 bits: 417.5 E(85289): 3.4e-116
Smith-Waterman score: 2839; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433)
10 20 30 40 50 60
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
370 380 390 400 410 420
430
pF1KA1 GEAAQSANESKNE
:::::::::::::
NP_115 GEAAQSANESKNE
430
>>XP_016872274 (OMIM: 607698) PREDICTED: ligand-dependen (558 aa)
initn: 2839 init1: 2839 opt: 2839 Z-score: 2205.2 bits: 417.5 E(85289): 4.3e-116
Smith-Waterman score: 2839; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:126-558)
10 20 30
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKN
::::::::::::::::::::::::::::::
XP_016 QAEEFLNAVFYRKDSPWVSDPNIPLVAREIMQRMIQQFAAEYTSKNSSTQDPSQPNSTKN
100 110 120 130 140 150
40 50 60 70 80 90
pF1KA1 QSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKS
160 170 180 190 200 210
100 110 120 130 140 150
pF1KA1 PCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLK
220 230 240 250 260 270
160 170 180 190 200 210
pF1KA1 VPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFR
280 290 300 310 320 330
220 230 240 250 260 270
pF1KA1 GNGALSNISDLPFLAENSAFPKMALQAKQDGKKDVSHSSPVDLKIPQVRGMDLSWESRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNGALSNISDLPFLAENSAFPKMALQAKQDGKKDVSHSSPVDLKIPQVRGMDLSWESRTG
340 350 360 370 380 390
280 290 300 310 320 330
pF1KA1 DQYSYSSLVMGSQTESALSKKLRAILPKQSRKSMLDAGPDSWGSDAEQSTSGQPYPTSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DQYSYSSLVMGSQTESALSKKLRAILPKQSRKSMLDAGPDSWGSDAEQSTSGQPYPTSDQ
400 410 420 430 440 450
340 350 360 370 380 390
pF1KA1 EGDPGSKQPRKKRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGDPGSKQPRKKRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERL
460 470 480 490 500 510
400 410 420 430
pF1KA1 GTLKNPPKKKMKLMRSEGPDVSVKIELDPQGEAAQSANESKNE
:::::::::::::::::::::::::::::::::::::::::::
XP_016 GTLKNPPKKKMKLMRSEGPDVSVKIELDPQGEAAQSANESKNE
520 530 540 550
>>XP_016872273 (OMIM: 607698) PREDICTED: ligand-dependen (575 aa)
initn: 2839 init1: 2839 opt: 2839 Z-score: 2205.0 bits: 417.5 E(85289): 4.4e-116
Smith-Waterman score: 2839; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:143-575)
10 20 30
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKN
::::::::::::::::::::::::::::::
XP_016 QAEEFLNAVFYRKDSPWVSDPNIPLVAREIMQRMIQQFAAEYTSKNSSTQDPSQPNSTKN
120 130 140 150 160 170
40 50 60 70 80 90
pF1KA1 QSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKS
180 190 200 210 220 230
100 110 120 130 140 150
pF1KA1 PCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLK
240 250 260 270 280 290
160 170 180 190 200 210
pF1KA1 VPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFR
300 310 320 330 340 350
220 230 240 250 260 270
pF1KA1 GNGALSNISDLPFLAENSAFPKMALQAKQDGKKDVSHSSPVDLKIPQVRGMDLSWESRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNGALSNISDLPFLAENSAFPKMALQAKQDGKKDVSHSSPVDLKIPQVRGMDLSWESRTG
360 370 380 390 400 410
280 290 300 310 320 330
pF1KA1 DQYSYSSLVMGSQTESALSKKLRAILPKQSRKSMLDAGPDSWGSDAEQSTSGQPYPTSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DQYSYSSLVMGSQTESALSKKLRAILPKQSRKSMLDAGPDSWGSDAEQSTSGQPYPTSDQ
420 430 440 450 460 470
340 350 360 370 380 390
pF1KA1 EGDPGSKQPRKKRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGDPGSKQPRKKRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERL
480 490 500 510 520 530
400 410 420 430
pF1KA1 GTLKNPPKKKMKLMRSEGPDVSVKIELDPQGEAAQSANESKNE
:::::::::::::::::::::::::::::::::::::::::::
XP_016 GTLKNPPKKKMKLMRSEGPDVSVKIELDPQGEAAQSANESKNE
540 550 560 570
>>XP_006718096 (OMIM: 607698) PREDICTED: ligand-dependen (593 aa)
initn: 2839 init1: 2839 opt: 2839 Z-score: 2204.8 bits: 417.5 E(85289): 4.5e-116
Smith-Waterman score: 2839; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:161-593)
10 20 30
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKN
::::::::::::::::::::::::::::::
XP_006 QAEEFLNAVFYRKDSPWVSDPNIPLVAREIMQRMIQQFAAEYTSKNSSTQDPSQPNSTKN
140 150 160 170 180 190
40 50 60 70 80 90
pF1KA1 QSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKS
200 210 220 230 240 250
100 110 120 130 140 150
pF1KA1 PCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLK
260 270 280 290 300 310
160 170 180 190 200 210
pF1KA1 VPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFR
320 330 340 350 360 370
220 230 240 250 260 270
pF1KA1 GNGALSNISDLPFLAENSAFPKMALQAKQDGKKDVSHSSPVDLKIPQVRGMDLSWESRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GNGALSNISDLPFLAENSAFPKMALQAKQDGKKDVSHSSPVDLKIPQVRGMDLSWESRTG
380 390 400 410 420 430
280 290 300 310 320 330
pF1KA1 DQYSYSSLVMGSQTESALSKKLRAILPKQSRKSMLDAGPDSWGSDAEQSTSGQPYPTSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DQYSYSSLVMGSQTESALSKKLRAILPKQSRKSMLDAGPDSWGSDAEQSTSGQPYPTSDQ
440 450 460 470 480 490
340 350 360 370 380 390
pF1KA1 EGDPGSKQPRKKRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EGDPGSKQPRKKRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERL
500 510 520 530 540 550
400 410 420 430
pF1KA1 GTLKNPPKKKMKLMRSEGPDVSVKIELDPQGEAAQSANESKNE
:::::::::::::::::::::::::::::::::::::::::::
XP_006 GTLKNPPKKKMKLMRSEGPDVSVKIELDPQGEAAQSANESKNE
560 570 580 590
>>NP_001164237 (OMIM: 607698) ligand-dependent corepress (406 aa)
initn: 2655 init1: 2655 opt: 2655 Z-score: 2065.3 bits: 391.2 E(85289): 2.7e-108
Smith-Waterman score: 2655; 100.0% identity (100.0% similar) in 404 aa overlap (1-404:1-404)
10 20 30 40 50 60
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMSG
370 380 390 400
430
pF1KA1 GEAAQSANESKNE
>>XP_011538579 (OMIM: 607698) PREDICTED: ligand-dependen (272 aa)
initn: 717 init1: 717 opt: 717 Z-score: 571.6 bits: 114.2 E(85289): 4.2e-25
Smith-Waterman score: 717; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:161-271)
10 20 30
pF1KA1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKN
::::::::::::::::::::::::::::::
XP_011 QAEEFLNAVFYRKDSPWVSDPNIPLVAREIMQRMIQQFAAEYTSKNSSTQDPSQPNSTKN
140 150 160 170 180 190
40 50 60 70 80 90
pF1KA1 QSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKS
200 210 220 230 240 250
100 110 120 130 140 150
pF1KA1 PCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLK
:::::::::::::::::::::
XP_011 PCAGSTSLSHSPGCSSTQGNGG
260 270
433 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 22:02:19 2016 done: Wed Nov 2 22:02:20 2016
Total Scan time: 9.780 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]