Result of FASTA (omim) for pF1KA1692
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1692, 833 aa
  1>>>pF1KA1692 833 - 833 aa - 833 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4986+/-0.000497; mu= 14.7378+/- 0.031
 mean_var=99.6210+/-20.511, 0's: 0 Z-trim(109.2): 146  B-trim: 0 in 0/53
 Lambda= 0.128499
 statistics sampled from 17277 (17412) to 17277 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.556), E-opt: 0.2 (0.204), width:  16
 Scan time: 10.360

The best scores are:                                      opt bits E(85289)
NP_001161384 (OMIM: 609594) ventricular zone-expre ( 833) 5433 1018.9       0
NP_078897 (OMIM: 609594) ventricular zone-expresse ( 833) 5433 1018.9       0
XP_011511437 (OMIM: 609594) PREDICTED: ventricular ( 788) 5153 967.0       0
XP_011511436 (OMIM: 609594) PREDICTED: ventricular ( 844) 5153 967.0       0
NP_001161383 (OMIM: 609594) ventricular zone-expre ( 788) 4054 763.2       0
NP_001161387 (OMIM: 609594) ventricular zone-expre ( 213) 1138 222.3 1.8e-57
NP_001161388 (OMIM: 609594) ventricular zone-expre ( 213) 1138 222.3 1.8e-57
NP_001161389 (OMIM: 609594) ventricular zone-expre ( 177) 1130 220.8 4.3e-57


>>NP_001161384 (OMIM: 609594) ventricular zone-expressed  (833 aa)
 initn: 5433 init1: 5433 opt: 5433  Z-score: 5447.2  bits: 1018.9 E(85289):    0
Smith-Waterman score: 5433; 100.0% identity (100.0% similar) in 833 aa overlap (1-833:1-833)

               10        20        30        40        50        60
pF1KA1 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 LIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 DEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 KLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 NTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 EIDPLGQGNDKLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIDPLGQGNDKLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 IEYQDKLYLHLKKNLSKVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEYQDKLYLHLKKNLSKVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 YSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 MMESTFPQQKDLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMESTFPQQKDLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 GKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRR
              730       740       750       760       770       780

              790       800       810       820       830   
pF1KA1 DRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
              790       800       810       820       830   

>>NP_078897 (OMIM: 609594) ventricular zone-expressed PH  (833 aa)
 initn: 5433 init1: 5433 opt: 5433  Z-score: 5447.2  bits: 1018.9 E(85289):    0
Smith-Waterman score: 5433; 100.0% identity (100.0% similar) in 833 aa overlap (1-833:1-833)

               10        20        30        40        50        60
pF1KA1 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 LIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 LIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 DEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 DEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 KLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 NTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 NTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 EIDPLGQGNDKLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 EIDPLGQGNDKLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 IEYQDKLYLHLKKNLSKVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 IEYQDKLYLHLKKNLSKVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 YSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 YSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 MMESTFPQQKDLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MMESTFPQQKDLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 GKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 GKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRR
              730       740       750       760       770       780

              790       800       810       820       830   
pF1KA1 DRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 DRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
              790       800       810       820       830   

>>XP_011511437 (OMIM: 609594) PREDICTED: ventricular zon  (788 aa)
 initn: 5153 init1: 5153 opt: 5153  Z-score: 5167.0  bits: 967.0 E(85289):    0
Smith-Waterman score: 5153; 100.0% identity (100.0% similar) in 787 aa overlap (47-833:2-788)

         20        30        40        50        60        70      
pF1KA1 AGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEICITRITTAIRETESIE
                                     ::::::::::::::::::::::::::::::
XP_011                              MDYQTNNNDQAVVEICITRITTAIRETESIE
                                            10        20        30 

         80        90       100       110       120       130      
pF1KA1 KHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNYNRPPVMALAIPIAVKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNYNRPPVMALAIPIAVKF
              40        50        60        70        80        90 

        140       150       160       170       180       190      
pF1KA1 LHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTMLLRVLPAVYEKQPQPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTMLLRVLPAVYEKQPQPI
             100       110       120       130       140       150 

        200       210       220       230       240       250      
pF1KA1 NRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPFLIGHLKDSTHNDIILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPFLIGHLKDSTHNDIILN
             160       170       180       190       200       210 

        260       270       280       290       300       310      
pF1KA1 ILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHVDEERARSCLTYLVSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHVDEERARSCLTYLVSQL
             220       230       240       250       260       270 

        320       330       340       350       360       370      
pF1KA1 ANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIAKLLTRQLENTKAGSGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIAKLLTRQLENTKAGSGR
             280       290       300       310       320       330 

        380       390       400       410       420       430      
pF1KA1 RKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGSNTPGSIRRYSLGQVSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGSNTPGSIRRYSLGQVSK
             340       350       360       370       380       390 

        440       450       460       470       480       490      
pF1KA1 EERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLSEIDPLGQGNDKLPFKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLSEIDPLGQGNDKLPFKT
             400       410       420       430       440       450 

        500       510       520       530       540       550      
pF1KA1 DTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASPIEYQDKLYLHLKKNLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASPIEYQDKLYLHLKKNLS
             460       470       480       490       500       510 

        560       570       580       590       600       610      
pF1KA1 KVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCLYSKSSFILISQEPQPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCLYSKSSFILISQEPQPW
             520       530       540       550       560       570 

        620       630       640       650       660       670      
pF1KA1 IQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETAMMESTFPQQKDLDQVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETAMMESTFPQQKDLDQVQ
             580       590       600       610       620       630 

        680       690       700       710       720       730      
pF1KA1 LHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIEGKLKEKQVRWKFIKRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIEGKLKEKQVRWKFIKRW
             640       650       660       670       680       690 

        740       750       760       770       780       790      
pF1KA1 KTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRRDRSLPRAFEIFTDNKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRRDRSLPRAFEIFTDNKT
             700       710       720       730       740       750 

        800       810       820       830   
pF1KA1 YVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
       :::::::::::::::::::::::::::::::::::::
XP_011 YVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
             760       770       780        

>>XP_011511436 (OMIM: 609594) PREDICTED: ventricular zon  (844 aa)
 initn: 5153 init1: 5153 opt: 5153  Z-score: 5166.5  bits: 967.0 E(85289):    0
Smith-Waterman score: 5153; 100.0% identity (100.0% similar) in 787 aa overlap (47-833:58-844)

         20        30        40        50        60        70      
pF1KA1 AGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEICITRITTAIRETESIE
                                     ::::::::::::::::::::::::::::::
XP_011 LERMRWGERRESRKKYVLNGRSTFLDYFLCDYQTNNNDQAVVEICITRITTAIRETESIE
        30        40        50        60        70        80       

         80        90       100       110       120       130      
pF1KA1 KHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNYNRPPVMALAIPIAVKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNYNRPPVMALAIPIAVKF
        90       100       110       120       130       140       

        140       150       160       170       180       190      
pF1KA1 LHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTMLLRVLPAVYEKQPQPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTMLLRVLPAVYEKQPQPI
       150       160       170       180       190       200       

        200       210       220       230       240       250      
pF1KA1 NRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPFLIGHLKDSTHNDIILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPFLIGHLKDSTHNDIILN
       210       220       230       240       250       260       

        260       270       280       290       300       310      
pF1KA1 ILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHVDEERARSCLTYLVSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHVDEERARSCLTYLVSQL
       270       280       290       300       310       320       

        320       330       340       350       360       370      
pF1KA1 ANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIAKLLTRQLENTKAGSGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIAKLLTRQLENTKAGSGR
       330       340       350       360       370       380       

        380       390       400       410       420       430      
pF1KA1 RKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGSNTPGSIRRYSLGQVSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGSNTPGSIRRYSLGQVSK
       390       400       410       420       430       440       

        440       450       460       470       480       490      
pF1KA1 EERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLSEIDPLGQGNDKLPFKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLSEIDPLGQGNDKLPFKT
       450       460       470       480       490       500       

        500       510       520       530       540       550      
pF1KA1 DTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASPIEYQDKLYLHLKKNLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASPIEYQDKLYLHLKKNLS
       510       520       530       540       550       560       

        560       570       580       590       600       610      
pF1KA1 KVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCLYSKSSFILISQEPQPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCLYSKSSFILISQEPQPW
       570       580       590       600       610       620       

        620       630       640       650       660       670      
pF1KA1 IQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETAMMESTFPQQKDLDQVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETAMMESTFPQQKDLDQVQ
       630       640       650       660       670       680       

        680       690       700       710       720       730      
pF1KA1 LHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIEGKLKEKQVRWKFIKRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIEGKLKEKQVRWKFIKRW
       690       700       710       720       730       740       

        740       750       760       770       780       790      
pF1KA1 KTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRRDRSLPRAFEIFTDNKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRRDRSLPRAFEIFTDNKT
       750       760       770       780       790       800       

        800       810       820       830   
pF1KA1 YVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
       :::::::::::::::::::::::::::::::::::::
XP_011 YVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
       810       820       830       840    

>>NP_001161383 (OMIM: 609594) ventricular zone-expressed  (788 aa)
 initn: 4037 init1: 4037 opt: 4054  Z-score: 4065.9  bits: 763.2 E(85289):    0
Smith-Waterman score: 5033; 94.6% identity (94.6% similar) in 833 aa overlap (1-833:1-788)

               10        20        30        40        50        60
pF1KA1 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 LIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 DEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 KLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 NTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 EIDPLGQGNDKLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIDPLGQGNDKLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 IEYQDKLYLHLKKNLSKVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEYQDKLYLHLKKNLSKVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 YSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETA
       :::::::::::::::::::::::::                                   
NP_001 YSKSSFILISQEPQPWIQIMFLFQQ-----------------------------------
              610       620                                        

              670       680       690       700       710       720
pF1KA1 MMESTFPQQKDLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIE
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ----------DLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIE
                   630       640       650       660       670     

              730       740       750       760       770       780
pF1KA1 GKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRR
         680       690       700       710       720       730     

              790       800       810       820       830   
pF1KA1 DRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL
         740       750       760       770       780        

>>NP_001161387 (OMIM: 609594) ventricular zone-expressed  (213 aa)
 initn: 1138 init1: 1138 opt: 1138  Z-score: 1152.9  bits: 222.3 E(85289): 1.8e-57
Smith-Waterman score: 1138; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KA1 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_001 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGMVR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
                                                                   
NP_001 KLSLGTCFGRYLKVFSSSIYGLWEARPRVLEAN                           
              190       200       210                              

>>NP_001161388 (OMIM: 609594) ventricular zone-expressed  (213 aa)
 initn: 1138 init1: 1138 opt: 1138  Z-score: 1152.9  bits: 222.3 E(85289): 1.8e-57
Smith-Waterman score: 1138; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KA1 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_001 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGMVR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF
                                                                   
NP_001 KLSLGTCFGRYLKVFSSSIYGLWEARPRVLEAN                           
              190       200       210                              

>>NP_001161389 (OMIM: 609594) ventricular zone-expressed  (177 aa)
 initn: 1130 init1: 1130 opt: 1130  Z-score: 1146.1  bits: 220.8 E(85289): 4.3e-57
Smith-Waterman score: 1130; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KA1 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
NP_001 NRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQV   
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KA1 LLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPF




833 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:51:59 2016 done: Wed Nov  2 21:52:00 2016
 Total Scan time: 10.360 Total Display time:  0.140

Function used was FASTA [36.3.4 Apr, 2011]
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