Result of FASTA (ccds) for pF1KA0732
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0732, 1419 aa
  1>>>pF1KA0732 1419 - 1419 aa - 1419 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8367+/-0.00106; mu= 13.0307+/- 0.064
 mean_var=174.5958+/-34.850, 0's: 0 Z-trim(109.5): 37  B-trim: 144 in 1/51
 Lambda= 0.097064
 statistics sampled from 10884 (10908) to 10884 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.335), width:  16
 Scan time:  6.270

The best scores are:                                      opt bits E(32554)
CCDS11016.1 SMG6 gene_id:23293|Hs108|chr17         (1419) 9444 1336.0       0
CCDS58498.1 SMG6 gene_id:23293|Hs108|chr17         ( 511) 3363 484.1 4.3e-136


>>CCDS11016.1 SMG6 gene_id:23293|Hs108|chr17              (1419 aa)
 initn: 9444 init1: 9444 opt: 9444  Z-score: 7152.9  bits: 1336.0 E(32554):    0
Smith-Waterman score: 9444; 99.9% identity (99.9% similar) in 1419 aa overlap (1-1419:1-1419)

               10        20        30        40        50        60
pF1KA0 MAEGLERVRISASELRGILATLAPQAGSRENMKELKEARPRKDNRRPDLEIYKPGLSRLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAEGLERVRISASELRGILATLAPQAGSRENMKELKEARPRKDNRRPDLEIYKPGLSRLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 NKPKIKEPPGSEEFKDEIVNDRDCSAVENGTQPVKDVCKELNNQEQNGPIDPENNRGQES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NKPKIKEPPGSEEFKDEIVNDRDCSAVENGTQPVKDVCKELNNQEQNGPIDPENNRGQES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 FPRTAGQEDRSLKIIKRTKKPDLQIYQPGRRLQTVSKESASRVEEEEVLNQVEQLRVEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FPRTAGQEDRSLKIIKRTKKPDLQIYQPGRRLQTVSKESASRVEEEEVLNQVEQLRVEED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 ECRGNVAKEEVANKPDRAEIEKSPGGGRVGAAKGEKGKRMGKGEGVRETHDDPARGRPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ECRGNVAKEEVANKPDRAEIEKSPGGGRVGAAKGEKGKRMGKGEGVRETHDDPARGRPGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 AKRYSRSDKRRNRYRTRSTSSAGSNNSAEGAGLTDNGCRRRRQDRTKERPPLKKQVSVSS
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
CCDS11 AKRYSRSDKRRNRYRTRSTSSAGSNNSAEGAGLTDNGCRRRRQDRTKERPRLKKQVSVSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 TDSLDEDRIDEPDGLGPRRSSERKRHLERNWSGRGEGEQKTSAKEYRGTLRVTFDAEAMN
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS11 TDSLDEDRIDEPDGLGPRRSSERKRHLERNWSGRGEGEQKNSAKEYRGTLRVTFDAEAMN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 KESPMVRSARDDMDRGKPDKGLSSGGKGSEKQESKNPKQELRGRGRGILILPAHTTLSVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KESPMVRSARDDMDRGKPDKGLSSGGKGSEKQESKNPKQELRGRGRGILILPAHTTLSVN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 SAGSPESAPLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKTQTPQLHFLDTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SAGSPESAPLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKTQTPQLHFLDTD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 DEVSPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYNPLQYPVGPTNGVYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DEVSPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYNPLQYPVGPTNGVYP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 GPYYPGYPTPSGQYVCSPLPTSTMSPEEVEQHMRNLQQQELHRLLRVADNQELQLSNLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GPYYPGYPTPSGQYVCSPLPTSTMSPEEVEQHMRNLQQQELHRLLRVADNQELQLSNLLS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 RDRISPEGLEKMAQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDRISPEGLEKMAQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLVK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 DPNVENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DPNVENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKY
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 ALISAQRCMICQGDIARYREQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALISAQRCMICQGDIARYREQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 RKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDLSPDQWRKGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDLSPDQWRKGKK
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 STFRHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 STFRHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAH
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 GKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFS
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 EECRSVIQEQAAALGLAMFSLLVRRCTCLLKESAKAQLSSPEDQDDQDDIKVSSFVPDLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EECRSVIQEQAAALGLAMFSLLVRRCTCLLKESAKAQLSSPEDQDDQDDIKVSSFVPDLK
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 ELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVWSTLADFCNILTAVNQSEVPLYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVWSTLADFCNILTAVNQSEVPLYK
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 DPDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DPDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCG
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 QEEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGTRLEDEEEDVVIEDFEEDSEAEGSGGED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QEEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGTRLEDEEEDVVIEDFEEDSEAEGSGGED
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 DIRELRAKKLALARKIAEQQRRQEKIQAVLEDHSQMRQMELEIRPLFLVPDTNGFIDHLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DIRELRAKKLALARKIAEQQRRQEKIQAVLEDHSQMRQMELEIRPLFLVPDTNGFIDHLA
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 SLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQRFES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQRFES
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA0 RDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPASKEEPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPASKEEPI
             1330      1340      1350      1360      1370      1380

             1390      1400      1410         
pF1KA0 RLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQVG
       :::::::::::::::::::::::::::::::::::::::
CCDS11 RLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQVG
             1390      1400      1410         

>>CCDS58498.1 SMG6 gene_id:23293|Hs108|chr17              (511 aa)
 initn: 3363 init1: 3363 opt: 3363  Z-score: 2556.8  bits: 484.1 E(32554): 4.3e-136
Smith-Waterman score: 3363; 100.0% identity (100.0% similar) in 511 aa overlap (909-1419:1-511)

      880       890       900       910       920       930        
pF1KA0 GLGSLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTR
                                     ::::::::::::::::::::::::::::::
CCDS58                               METFPAVAEKVLKEFQVLLQHSPSPIGSTR
                                             10        20        30

      940       950       960       970       980       990        
pF1KA0 MLQLMTINMFAVHNSQLKDCFSEECRSVIQEQAAALGLAMFSLLVRRCTCLLKESAKAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MLQLMTINMFAVHNSQLKDCFSEECRSVIQEQAAALGLAMFSLLVRRCTCLLKESAKAQL
               40        50        60        70        80        90

     1000      1010      1020      1030      1040      1050        
pF1KA0 SSPEDQDDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SSPEDQDDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVW
              100       110       120       130       140       150

     1060      1070      1080      1090      1100      1110        
pF1KA0 STLADFCNILTAVNQSEVPLYKDPDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 STLADFCNILTAVNQSEVPLYKDPDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSD
              160       170       180       190       200       210

     1120      1130      1140      1150      1160      1170        
pF1KA0 KVIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGTRLEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KVIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGTRLEDE
              220       230       240       250       260       270

     1180      1190      1200      1210      1220      1230        
pF1KA0 EEDVVIEDFEEDSEAEGSGGEDDIRELRAKKLALARKIAEQQRRQEKIQAVLEDHSQMRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EEDVVIEDFEEDSEAEGSGGEDDIRELRAKKLALARKIAEQQRRQEKIQAVLEDHSQMRQ
              280       290       300       310       320       330

     1240      1250      1260      1270      1280      1290        
pF1KA0 MELEIRPLFLVPDTNGFIDHLASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MELEIRPLFLVPDTNGFIDHLASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGG
              340       350       360       370       380       390

     1300      1310      1320      1330      1340      1350        
pF1KA0 YARVVQEKARKSIEFLEQRFESRDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YARVVQEKARKSIEFLEQRFESRDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILS
              400       410       420       430       440       450

     1360      1370      1380      1390      1400      1410        
pF1KA0 CCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 CCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQV
              460       470       480       490       500       510

        
pF1KA0 G
       :
CCDS58 G
        




1419 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:36:53 2016 done: Wed Nov  2 19:36:54 2016
 Total Scan time:  6.270 Total Display time:  0.120

Function used was FASTA [36.3.4 Apr, 2011]
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