(Linear) (Six-base) MAPSORT of: KIAA0732.seq Check: 2489 from: 1 to: 4257 KIAA0732.orf With 182 enzymes: SgfI * October 24, 2006 15:07 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 2968 4257 Size: 2968 1289 AccI GT'mk_AC Cuts at: 0 2332 2521 3175 4257 Size: 2332 189 654 1082 Fragments arranged by size: 2332 1082 654 189 Acc65I G'GTAC_C Cuts at: 0 2210 2261 4257 Size: 2210 51 1996 Fragments arranged by size: 2210 1996 51 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 895 2050 2287 3076 3412 3599 4257 Size: 895 1155 237 789 336 187 658 Fragments arranged by size: 1155 895 789 658 336 237 187 AfeI AGC'GCT Cuts at: 0 727 801 1873 4257 Size: 727 74 1072 2384 Fragments arranged by size: 2384 1072 727 74 AflII C'TTAA_G Cuts at: 0 2968 4257 Size: 2968 1289 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 3387 4257 Size: 3387 870 AlwNI CAG_nnn'CTG Cuts at: 0 1546 1740 1776 1926 2073 2746 3577 4257 Size: 1546 194 36 150 147 673 831 680 Fragments arranged by size: 1546 831 680 673 194 150 147 36 ApaI G_GGCC'C Cuts at: 0 1600 4248 4257 Size: 1600 2648 9 Fragments arranged by size: 2648 1600 9 ApoI r'AATT_y Cuts at: 0 217 2479 4257 Size: 217 2262 1778 Fragments arranged by size: 2262 1778 217 AvaI C'yCGr_G Cuts at: 0 1696 3291 3940 4257 Size: 1696 1595 649 317 Fragments arranged by size: 1696 1595 649 317 AvrII C'CTAG_G Cuts at: 0 364 4257 Size: 364 3893 BamHI G'GATC_C Cuts at: 0 50 1980 4257 Size: 50 1930 2277 Fragments arranged by size: 2277 1930 50 BanI G'GyrC_C Cuts at: 0 1348 2210 2261 2297 3225 3468 3822 4257 Size: 1348 862 51 36 928 243 354 435 Fragments arranged by size: 1348 928 862 435 354 243 51 36 BanII G_rGCy'C Cuts at: 0 610 718 1600 2030 2494 3722 3981 4248 Size: 610 108 882 430 464 1228 259 267 Cuts at: 4248 4257 Size: 9 Fragments arranged by size: 1228 882 610 464 430 267 259 108 9 BbeI G_GCGC'C Cuts at: 0 2301 4257 Size: 2301 1956 BbsI GAAGACnn'nnnn_ Cuts at: 0 2108 2582 3029 3560 4257 Size: 2108 474 447 531 697 Fragments arranged by size: 2108 697 531 474 447 BbvCI CC'TCA_GC Cuts at: 0 803 4257 Size: 803 3454 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 3643 3677 3912 3946 3984 4018 4257 Size: 3643 34 235 34 38 34 239 Fragments arranged by size: 3643 239 235 38 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 0 1568 4257 Size: 1568 2689 BclI T'GATC_A Cuts at: 0 1383 2165 3836 4257 Size: 1383 782 1671 421 Fragments arranged by size: 1671 1383 782 421 BfrBI ATG'CAT Cuts at: 0 2183 4257 Size: 2183 2074 BglI GCCn_nnn'nGGC Cuts at: 0 73 1346 3784 4140 4257 Size: 73 1273 2438 356 117 Fragments arranged by size: 2438 1273 356 117 73 BglII A'GATC_T Cuts at: 0 141 431 2561 4257 Size: 141 290 2130 1696 Fragments arranged by size: 2130 1696 290 141 BlpI GC'TnA_GC Cuts at: 0 780 1783 2987 3650 4257 Size: 780 1003 1204 663 607 Fragments arranged by size: 1204 1003 780 663 607 Bme1580I G_kGCm'C Cuts at: 0 1600 2175 2602 3827 4248 4257 Size: 1600 575 427 1225 421 9 Fragments arranged by size: 1600 1225 575 427 421 9 BmrI ACTGGGnnnn_n' Cuts at: 0 1548 1585 2648 3065 4257 Size: 1548 37 1063 417 1192 Fragments arranged by size: 1548 1192 1063 417 37 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 2907 3363 4257 Size: 2907 456 894 Fragments arranged by size: 2907 894 456 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 34 1256 1782 1846 2578 3709 3817 4257 Size: 34 1222 526 64 732 1131 108 440 Fragments arranged by size: 1222 1131 732 526 440 108 64 34 Bpu10I CC'TnA_GC Cuts at: 0 175 803 1481 2488 4103 4257 Size: 175 628 678 1007 1615 154 Fragments arranged by size: 1615 1007 678 628 175 154 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1164 2743 4257 Size: 1164 1579 1514 Fragments arranged by size: 1579 1514 1164 BsaI GGTCTCn'nnnn_ Cuts at: 0 2428 4257 Size: 2428 1829 BsaAI yAC'GTr Cuts at: 0 3336 4241 4257 Size: 3336 905 16 Fragments arranged by size: 3336 905 16 BsaHI Gr'CG_yC Cuts at: 0 135 1411 2298 4257 Size: 135 1276 887 1959 Fragments arranged by size: 1959 1276 887 135 BsaWI w'CCGG_w Cuts at: 0 1815 4175 4257 Size: 1815 2360 82 Fragments arranged by size: 2360 1815 82 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 1780 1810 4257 Size: 1780 30 2447 Fragments arranged by size: 2447 1780 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 505 1714 2352 2896 3116 3547 3550 4144 Size: 505 1209 638 544 220 431 3 594 Cuts at: 4144 4257 Size: 113 Fragments arranged by size: 1209 638 594 544 505 431 220 113 3 BseYI C'CCAG_C Cuts at: 0 1415 2174 2273 2637 2858 3886 4044 4227 Size: 1415 759 99 364 221 1028 158 183 Cuts at: 4227 4257 Size: 30 Fragments arranged by size: 1415 1028 759 364 221 183 158 99 30 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1726 2940 4257 Size: 1726 1214 1317 Fragments arranged by size: 1726 1317 1214 BsiHKAI G_wGCw'C Cuts at: 0 2030 3722 4257 Size: 2030 1692 535 Fragments arranged by size: 2030 1692 535 BsmI GAATG_Cn' Cuts at: 0 1220 1941 3439 4257 Size: 1220 721 1498 818 Fragments arranged by size: 1498 1220 818 721 Bsp1286I G_dGCh'C Cuts at: 0 610 718 1600 2030 2175 2494 2602 3722 Size: 610 108 882 430 145 319 108 1120 Cuts at: 3722 3827 3981 4248 4257 Size: 105 154 267 9 Fragments arranged by size: 1120 882 610 430 319 267 154 145 108 108 105 9 BspEI T'CCGG_A Cuts at: 0 1815 4257 Size: 1815 2442 BspHI T'CATG_A Cuts at: 0 2417 4257 Size: 2417 1840 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 434 1255 1401 1733 1799 2067 2968 4190 Size: 434 821 146 332 66 268 901 1222 Cuts at: 4190 4257 Size: 67 Fragments arranged by size: 1222 901 821 434 332 268 146 67 66 BsrBI CCG'CTC Cuts at: 0 737 2891 4257 Size: 737 2154 1366 Fragments arranged by size: 2154 1366 737 BsrDI GCAATG_nn' Cuts at: 0 2279 4002 4257 Size: 2279 1723 255 Fragments arranged by size: 2279 1723 255 BsrGI T'GTAC_A Cuts at: 0 3233 4257 Size: 3233 1024 BstAPI GCAn_nnn'nTGC Cuts at: 0 2189 4257 Size: 2189 2068 BstXI CCAn_nnnn'nTGG Cuts at: 0 486 2556 2698 3138 3627 3886 4257 Size: 486 2070 142 440 489 259 371 Fragments arranged by size: 2070 489 486 440 371 259 142 BstYI r'GATC_y Cuts at: 0 26 50 141 431 1309 1324 1922 1980 Size: 26 24 91 290 878 15 598 58 Cuts at: 1980 2561 3141 3674 4257 Size: 581 580 533 583 Fragments arranged by size: 878 598 583 581 580 533 290 91 58 26 24 15 BstZ17I GTA'TAC Cuts at: 0 2333 4257 Size: 2333 1924 Bsu36I CC'TnA_GG Cuts at: 0 3002 3320 4257 Size: 3002 318 937 Fragments arranged by size: 3002 937 318 BtgI C'CryG_G Cuts at: 0 702 999 1091 1341 2584 2697 3485 3990 Size: 702 297 92 250 1243 113 788 505 Cuts at: 3990 4257 Size: 267 Fragments arranged by size: 1243 788 702 505 297 267 250 113 92 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 2193 3996 4257 Size: 2193 1803 261 Fragments arranged by size: 2193 1803 261 BtsI GCAGTG_nn' Cuts at: 0 1155 2333 2747 3215 4029 4257 Size: 1155 1178 414 468 814 228 Fragments arranged by size: 1178 1155 814 468 414 228 EaeI y'GGCC_r Cuts at: 0 996 2927 3635 3776 3857 4038 4257 Size: 996 1931 708 141 81 181 219 Fragments arranged by size: 1931 996 708 219 181 141 81 EarI CTCTTCn'nnn_ Cuts at: 0 964 1052 2426 3269 3419 4257 Size: 964 88 1374 843 150 838 Fragments arranged by size: 1374 964 843 838 150 88 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 19 465 2520 2938 2967 4257 Size: 19 446 2055 418 29 1290 Fragments arranged by size: 2055 1290 446 418 29 19 EcoICRI GAG'CTC Cuts at: 0 2028 3720 4257 Size: 2028 1692 537 Fragments arranged by size: 2028 1692 537 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 34 895 1256 1782 1846 2050 2287 2578 Size: 34 861 361 526 64 204 237 291 Cuts at: 2578 3076 3412 3599 3709 3817 4257 Size: 498 336 187 110 108 440 Fragments arranged by size: 861 526 498 440 361 336 291 237 204 187 110 108 64 34 EcoNI CCTnn'n_nnAGG Cuts at: 0 363 508 1136 3274 3859 4257 Size: 363 145 628 2138 585 398 Fragments arranged by size: 2138 628 585 398 363 145 EcoO109I rG'GnC_Cy Cuts at: 0 946 1291 1368 1543 1597 1621 1821 2754 Size: 946 345 77 175 54 24 200 933 Cuts at: 2754 3240 3324 4257 Size: 486 84 933 Fragments arranged by size: 946 933 933 486 345 200 175 84 77 54 24 EcoRI G'AATT_C Cuts at: 0 217 4257 Size: 217 4040 FspI TGC'GCA Cuts at: 0 2371 4257 Size: 2371 1886 HaeII r_GCGC'y Cuts at: 0 729 803 1875 2301 4198 4257 Size: 729 74 1072 426 1897 59 Fragments arranged by size: 1897 1072 729 426 74 59 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 2860 2892 3133 3157 3165 3189 4257 Size: 2860 32 241 24 8 24 1068 Fragments arranged by size: 2860 1068 241 32 24 24 8 HincII GTy'rAC Cuts at: 0 3176 4166 4257 Size: 3176 990 91 Fragments arranged by size: 3176 990 91 HindIII A'AGCT_T Cuts at: 0 2344 4257 Size: 2344 1913 KasI G'GCGC_C Cuts at: 0 2297 4257 Size: 2297 1960 KpnI G_GTAC'C Cuts at: 0 2214 2265 4257 Size: 2214 51 1992 Fragments arranged by size: 2214 1992 51 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 17 2517 4257 Size: 17 2500 1740 Fragments arranged by size: 2500 1740 17 MscI TGG'CCA Cuts at: 0 2929 3637 3778 3859 4040 4257 Size: 2929 708 141 81 181 217 Fragments arranged by size: 2929 708 217 181 141 81 MslI CAynn'nnrTG Cuts at: 0 2696 2836 3031 3817 4257 Size: 2696 140 195 786 440 Fragments arranged by size: 2696 786 440 195 140 MspA1I CmG'CkG Cuts at: 0 704 784 2862 2954 2991 3367 3587 4044 Size: 704 80 2078 92 37 376 220 457 Cuts at: 4044 4257 Size: 213 Fragments arranged by size: 2078 704 457 376 220 213 92 80 37 NarI GG'CG_CC Cuts at: 0 2298 4257 Size: 2298 1959 NcoI C'CATG_G Cuts at: 0 1091 2697 3485 4257 Size: 1091 1606 788 772 Fragments arranged by size: 1606 1091 788 772 NsiI A_TGCA'T Cuts at: 0 2185 4257 Size: 2185 2072 NspI r_CATG'y Cuts at: 0 2536 2817 3157 4257 Size: 2536 281 340 1100 Fragments arranged by size: 2536 1100 340 281 PasI CC'CwG_GG Cuts at: 0 205 1618 2595 4257 Size: 205 1413 977 1662 Fragments arranged by size: 1662 1413 977 205 PflMI CCAn_nnn'nTGG Cuts at: 0 616 4257 Size: 616 3641 PfoI T'CCnGG_A Cuts at: 0 2900 3047 3269 3686 4257 Size: 2900 147 222 417 571 Fragments arranged by size: 2900 571 417 222 147 PmlI CAC'GTG Cuts at: 0 4241 4257 Size: 4241 16 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 1766 1798 4257 Size: 1766 32 2459 Fragments arranged by size: 2459 1766 32 PpuMI rG'GwC_Cy Cuts at: 0 946 1291 1368 2754 3240 3324 4257 Size: 946 345 77 1386 486 84 933 Fragments arranged by size: 1386 946 933 486 345 84 77 PshAI GACnn'nnGTC Cuts at: 0 3698 4257 Size: 3698 559 PspOMI G'GGCC_C Cuts at: 0 1596 4244 4257 Size: 1596 2648 13 Fragments arranged by size: 2648 1596 13 PspXI vC'TCGA_Gb Cuts at: 0 3940 4257 Size: 3940 317 PstI C_TGCA'G Cuts at: 0 431 1730 1781 1862 2078 2742 2783 2822 Size: 431 1299 51 81 216 664 41 39 Cuts at: 2822 3210 4257 Size: 388 1047 Fragments arranged by size: 1299 1047 664 431 388 216 81 51 41 39 PvuII CAG'CTG Cuts at: 0 784 2862 2991 3367 4044 4257 Size: 784 2078 129 376 677 213 Fragments arranged by size: 2078 784 677 376 213 129 SacI G_AGCT'C Cuts at: 0 2030 3722 4257 Size: 2030 1692 535 Fragments arranged by size: 2030 1692 535 SacII CC_GC'GG Cuts at: 0 705 4257 Size: 705 3552 SalI G'TCGA_C Cuts at: 0 3174 4257 Size: 3174 1083 SanDI GG'GwC_CC Cuts at: 0 1368 4257 Size: 1368 2889 SapI GCTCTTCn'nnn_ Cuts at: 0 3419 4257 Size: 3419 838 SexAI A'CCwGG_T Cuts at: 0 509 4257 Size: 509 3748 SfcI C'TryA_G Cuts at: 0 326 427 1582 1726 1777 1858 2074 2738 Size: 326 101 1155 144 51 81 216 664 Cuts at: 2738 2779 2818 3206 4257 Size: 41 39 388 1051 Fragments arranged by size: 1155 1051 664 388 326 216 144 101 81 51 41 39 SfiI GGCCn_nnn'nGGCC Cuts at: 0 73 4257 Size: 73 4184 SfoI GGC'GCC Cuts at: 0 2299 4257 Size: 2299 1958 SmlI C'TyrA_G Cuts at: 0 1143 2758 2968 3940 4257 Size: 1143 1615 210 972 317 Fragments arranged by size: 1615 1143 972 317 210 SphI G_CATG'C Cuts at: 0 2817 4257 Size: 2817 1440 StyI C'CwwG_G Cuts at: 0 364 857 1091 2193 2405 2697 3485 3860 Size: 364 493 234 1102 212 292 788 375 Cuts at: 3860 4257 Size: 397 Fragments arranged by size: 1102 788 493 397 375 364 292 234 212 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 257 4257 Size: 257 4000 TatI w'GTAC_w Cuts at: 0 2847 3233 3809 4257 Size: 2847 386 576 448 Fragments arranged by size: 2847 576 448 386 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 526 558 1646 1677 1678 1709 3105 3137 Size: 526 32 1088 31 1 31 1396 32 Cuts at: 3137 3443 3475 4170 4202 4257 Size: 306 32 695 32 55 Fragments arranged by size: 1396 1088 695 526 306 55 32 32 32 32 31 31 1 Tth111I GACn'n_nGTC Cuts at: 0 1647 2353 4257 Size: 1647 706 1904 Fragments arranged by size: 1904 1647 706 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 316 1113 4257 Size: 316 797 3144 Fragments arranged by size: 3144 797 316 XhoI C'TCGA_G Cuts at: 0 3940 4257 Size: 3940 317 XmnI GAAnn'nnTTC Cuts at: 0 359 1939 2006 4257 Size: 359 1580 67 2251 Fragments arranged by size: 2251 1580 359 67 Enzymes that do cut: AarI AccI Acc65I AcuI AfeI AflII AlfI AlwNI ApaI ApoI AvaI AvrII BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrGI BstAPI BstXI BstYI BstZ17I Bsu36I BtgI BtgZI BtsI EaeI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII KasI KpnI MmeI MscI MslI MspA1I NarI NcoI NsiI NspI PasI PflMI PfoI PmlI PpiI PpuMI PshAI PspOMI PspXI PstI PvuII SacI SacII SalI SanDI SapI SexAI SfcI SfiI SfoI SmlI SphI StyI TaqII TatI TstI Tth111I XcmI XhoI XmnI Enzymes that do not cut: AatII AclI AflIII AgeI AhdI AleI AloI ApaLI AscI AseI AsiSI BaeI BmgBI BmtI BsaBI BsiEI BsiWI BsmBI BsrFI BssHII BssSI BstBI BstEII ClaI CspCI DraI DraIII DrdI EagI EcoRV FalI FseI FspAI HpaI MfeI MluI NaeI NdeI NgoMIV NheI NotI NruI PacI PciI PmeI PsiI PsrI PvuI RsrII SbfI ScaI SgfI SgrAI SmaI SnaBI SpeI SrfI SspI StuI SwaI XbaI XmaI ZraI