Result of FASTA (ccds) for pF1KA0560
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0560, 1485 aa
  1>>>pF1KA0560 1485 - 1485 aa - 1485 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8429+/-0.00122; mu= 15.5644+/- 0.073
 mean_var=90.9695+/-17.758, 0's: 0 Z-trim(102.9): 41  B-trim: 0 in 0/51
 Lambda= 0.134470
 statistics sampled from 7136 (7146) to 7136 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.559), E-opt: 0.2 (0.22), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS42013.1 AQR gene_id:9716|Hs108|chr15           (1485) 9917 1935.3       0
CCDS12386.1 UPF1 gene_id:5976|Hs108|chr19          (1118)  324 74.2 2.5e-12
CCDS74315.1 UPF1 gene_id:5976|Hs108|chr19          (1129)  324 74.2 2.5e-12


>>CCDS42013.1 AQR gene_id:9716|Hs108|chr15                (1485 aa)
 initn: 9917 init1: 9917 opt: 9917  Z-score: 10390.7  bits: 1935.3 E(32554):    0
Smith-Waterman score: 9917; 100.0% identity (100.0% similar) in 1485 aa overlap (1-1485:1-1485)

               10        20        30        40        50        60
pF1KA0 MAAPAQPKKIVAPTVSQINAEFVTQLACKYWAPHIKKKSPFDIKVIEDIYEKEIVKSRFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAAPAQPKKIVAPTVSQINAEFVTQLACKYWAPHIKKKSPFDIKVIEDIYEKEIVKSRFA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 IRKIMLLEFSQYLENYLWMNYSPEVSSKAYLMSICCMVNEKFRENVPAWEIFKKKPDHFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IRKIMLLEFSQYLENYLWMNYSPEVSSKAYLMSICCMVNEKFRENVPAWEIFKKKPDHFP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 FFFKHILKAALAETDGEFSLHEQTVLLLFLDHCFNSLEVDLIRSQVQQLISLPMWMGLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FFFKHILKAALAETDGEFSLHEQTVLLLFLDHCFNSLEVDLIRSQVQQLISLPMWMGLQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 ARLELELKKTPKLRKFWNLIKKNDEKMDPEAREQAYQERRFLSQLIQKFISVLKSVPLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ARLELELKKTPKLRKFWNLIKKNDEKMDPEAREQAYQERRFLSQLIQKFISVLKSVPLSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 PVTMDKVHYCERFIELMIDLEALLPTRRWFNTILDDSHLLVHCYLSNLVRREEDGHLFSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PVTMDKVHYCERFIELMIDLEALLPTRRWFNTILDDSHLLVHCYLSNLVRREEDGHLFSQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 LLDMLKFYTGFEINDQTGNALTENEMTTIHYDRITSLQRAAFAHFPELYDFALSNVAEVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LLDMLKFYTGFEINDQTGNALTENEMTTIHYDRITSLQRAAFAHFPELYDFALSNVAEVD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 TRESLVKFFGPLSSNTLHQVASYLCLLPTLPKNEDTTFDKEFLLELLVSRHERRISQIQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TRESLVKFFGPLSSNTLHQVASYLCLLPTLPKNEDTTFDKEFLLELLVSRHERRISQIQQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 LNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 IRQDIEDSVSRMKPWQSEYGGVVFGGWARMAQPIVAFTVVEVAKPNIGENWPTRVRADVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IRQDIEDSVSRMKPWQSEYGGVVFGGWARMAQPIVAFTVVEVAKPNIGENWPTRVRADVT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 INLNVRDHIKDEWEGLRKHDVCFLITVRPTKPYGTKFDRRRPFIEQVGLVYVRGCEIQGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 INLNVRDHIKDEWEGLRKHDVCFLITVRPTKPYGTKFDRRRPFIEQVGLVYVRGCEIQGM
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 LDDKGRVIEDGPEPRPNLRGESRTFRVFLDPNQYQQDMTNTIQNGAEDVYETFNIIMRRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LDDKGRVIEDGPEPRPNLRGESRTFRVFLDPNQYQQDMTNTIQNGAEDVYETFNIIMRRK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 PKENNFKAVLETIRNLMNTDCVVPDWLHDIILGYGDPSSAHYSKMPNQIATLDFNDTFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PKENNFKAVLETIRNLMNTDCVVPDWLHDIILGYGDPSSAHYSKMPNQIATLDFNDTFLS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 IEHLKASFPGHNVKVTVEDPALQIPPFRITFPVRSGKGKKRKDADVEDEDTEEAKTLIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IEHLKASFPGHNVKVTVEDPALQIPPFRITFPVRSGKGKKRKDADVEDEDTEEAKTLIVE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 PHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNI
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 YHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNY
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 VLARRIELLEEVKRLQKSLGVPGDASYTCETAGYFFLYQVMSRWEEYISKVKNKGSTLPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VLARRIELLEEVKRLQKSLGVPGDASYTCETAGYFFLYQVMSRWEEYISKVKNKGSTLPD
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 VTEVSTFFPFHEYFANAPQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VTEVSTFFPFHEYFANAPQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSG
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 LDRSKYLLVKEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LDRSKYLLVKEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQN
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 PQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PQDGFSRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRAR
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 ASLCNLYNWRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ASLCNLYNWRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQN
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 LGEAEYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LGEAEYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTV
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 DRFQGQQNDYILLSLVRTRAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DRFQGQQNDYILLSLVRTRAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAF
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA0 SQLTARPLHLHIIPTEPFPTTRKNGERPSHEVQIIKNMPQMANFVYNMYMHLIQTTHHYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SQLTARPLHLHIIPTEPFPTTRKNGERPSHEVQIIKNMPQMANFVYNMYMHLIQTTHHYH
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KA0 QTLLQLPPAMVEEGEEVQNQETELETEEEAMTVQADIIPSPTDTSCRQETPAFQTDTTPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QTLLQLPPAMVEEGEEVQNQETELETEEEAMTVQADIIPSPTDTSCRQETPAFQTDTTPS
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480     
pF1KA0 ETGATSTPEAIPALSETTPTVVGAVSAPAEANTPQDATSAPEETK
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ETGATSTPEAIPALSETTPTVVGAVSAPAEANTPQDATSAPEETK
             1450      1460      1470      1480     

>>CCDS12386.1 UPF1 gene_id:5976|Hs108|chr19               (1118 aa)
 initn: 269 init1: 133 opt: 324  Z-score: 334.8  bits: 74.2 E(32554): 2.5e-12
Smith-Waterman score: 354; 24.2% identity (52.4% similar) in 492 aa overlap (1013-1481:590-1048)

            990      1000      1010      1020       1030      1040 
pF1KA0 KGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRS-KYLLVKEAKIIAMTCTH
                                     :.:    .: :. .  :. .: .:  ::. 
CCDS12 ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
     560       570       580       590       600       610         

            1050      1060      1070      1080      1090      1100 
pF1KA0 AALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLP
       :.  :  :.:. :.  .::..:..:  : : ..:..:          :. :..::: :: 
CCDS12 AGDPR--LAKMQFR--SILIDESTQATEPECMVPVVLGA--------KQLILVGDHCQLG
     620         630         640       650               660       

            1110      1120      1130      1140       1150      1160
pF1KA0 PVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNL-YNWRYKNLGNLPHV
       ::.      : ... :::: :.: .:.  . :..: : . .:  .  :  :.  :.: . 
CCDS12 PVVMCKKAAK-AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE--GSLQN-
       670        680       690       700       710         720    

             1170      1180            1190      1200      1210    
pF1KA0 QLLPEFSTANAGLLYDFQLINVED--F----QGVGESEPNPYFYQNLGEAEYVVALFMYM
         .   . .. :  .:::  . .   :    ::  :   .   : :  ::  :  .   .
CCDS12 -GVTAADRVKKG--FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL
            730         740       750       760       770       780

         1220      1230      1240      1250      1260      1270    
pF1KA0 CLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLS
          :   :.:.:.: :.::.  . . ..   . .  . .  ....:: :::...:.:.::
CCDS12 LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS
              790       800       810       820       830       840

            1280      1290      1300      1310      1320      1330 
pF1KA0 LVRT---RAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLH
        ::.   ...: : : ::: ::..::: :. : .  . ...     : ...:     . .
CCDS12 CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK----QPLWNHLLNYYKEQK
              850       860       870       880           890      

            1340      1350      1360      1370      1380      1390 
pF1KA0 IIPTEPFPTTRKNGERPSHEVQIIKNMPQMANFVYNMYMHLIQTTHHYHQTLLQLPPAMV
       ..   :. . :..  . :.  ......   : :.         ::  :      .: .. 
CCDS12 VLVEGPLNNLRESLMQFSKPRKLVNTINPGARFM---------TTAMYDAREAIIPGSVY
        900       910       920       930                940       

            1400      1410             1420      1430      1440    
pF1KA0 EEGEEVQNQETELETEEEAMTVQADI-------IPSPTDTSCRQETPAFQTDTTPSETGA
       ... . . .   ..:...   ..:         :: : .       :      . . ...
CCDS12 DRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAG
       950       960       970       980       990      1000       

         1450      1460      1470           1480                   
pF1KA0 TSTPEAIPALSETTPTVVGAVSAPAEANTP-----QDATSAPEETK              
        .::..  . .    .  : . .:...: :     ::..: :                  
CCDS12 RGTPKGKTGRGGRQKNRFG-LPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQ
      1010      1020       1030      1040      1050      1060      

CCDS12 MSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
       1070      1080      1090      1100      1110        

>>CCDS74315.1 UPF1 gene_id:5976|Hs108|chr19               (1129 aa)
 initn: 269 init1: 133 opt: 324  Z-score: 334.8  bits: 74.2 E(32554): 2.5e-12
Smith-Waterman score: 354; 24.2% identity (52.4% similar) in 492 aa overlap (1013-1481:601-1059)

            990      1000      1010      1020       1030      1040 
pF1KA0 KGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRS-KYLLVKEAKIIAMTCTH
                                     :.:    .: :. .  :. .: .:  ::. 
CCDS74 ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
              580       590       600       610       620       630

            1050      1060      1070      1080      1090      1100 
pF1KA0 AALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLP
       :.  :  :.:. :.  .::..:..:  : : ..:..:          :. :..::: :: 
CCDS74 AGDPR--LAKMQFR--SILIDESTQATEPECMVPVVLGA--------KQLILVGDHCQLG
                640         650       660               670        

            1110      1120      1130      1140       1150      1160
pF1KA0 PVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNL-YNWRYKNLGNLPHV
       ::.      : ... :::: :.: .:.  . :..: : . .:  .  :  :.  :.: . 
CCDS74 PVVMCKKAAK-AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE--GSLQN-
      680        690       700       710       720         730     

             1170      1180            1190      1200      1210    
pF1KA0 QLLPEFSTANAGLLYDFQLINVED--F----QGVGESEPNPYFYQNLGEAEYVVALFMYM
         .   . .. :  .:::  . .   :    ::  :   .   : :  ::  :  .   .
CCDS74 -GVTAADRVKKG--FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL
           740         750       760       770       780       790 

         1220      1230      1240      1250      1260      1270    
pF1KA0 CLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLS
          :   :.:.:.: :.::.  . . ..   . .  . .  ....:: :::...:.:.::
CCDS74 LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS
             800       810       820       830       840       850 

            1280      1290      1300      1310      1320      1330 
pF1KA0 LVRT---RAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLH
        ::.   ...: : : ::: ::..::: :. : .  . ...     : ...:     . .
CCDS74 CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK----QPLWNHLLNYYKEQK
             860       870       880       890           900       

            1340      1350      1360      1370      1380      1390 
pF1KA0 IIPTEPFPTTRKNGERPSHEVQIIKNMPQMANFVYNMYMHLIQTTHHYHQTLLQLPPAMV
       ..   :. . :..  . :.  ......   : :.         ::  :      .: .. 
CCDS74 VLVEGPLNNLRESLMQFSKPRKLVNTINPGARFM---------TTAMYDAREAIIPGSVY
       910       920       930       940                950        

            1400      1410             1420      1430      1440    
pF1KA0 EEGEEVQNQETELETEEEAMTVQADI-------IPSPTDTSCRQETPAFQTDTTPSETGA
       ... . . .   ..:...   ..:         :: : .       :      . . ...
CCDS74 DRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAG
      960       970       980       990      1000      1010        

         1450      1460      1470           1480                   
pF1KA0 TSTPEAIPALSETTPTVVGAVSAPAEANTP-----QDATSAPEETK              
        .::..  . .    .  : . .:...: :     ::..: :                  
CCDS74 RGTPKGKTGRGGRQKNRFG-LPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQ
     1020      1030       1040      1050      1060      1070       

CCDS74 MSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
      1080      1090      1100      1110      1120         




1485 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 19:16:02 2016 done: Wed Nov  2 19:16:03 2016
 Total Scan time:  2.860 Total Display time:  0.130

Function used was FASTA [36.3.4 Apr, 2011]
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