hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080304/iprscan-20080304-22003268/chunk_1/iprscan-20080304-22003268.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KA0234 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08429.1.ls PLU-1-like protein 472.5 4.7e-139 1 PF08429.1.fs PLU-1-like protein 472.5 4.9e-139 2 PF02373.13.fs JmjC domain 220.7 9.2e-65 1 PF02373.13.ls JmjC domain 222.7 7.8e-64 1 PF00628.19.fs PHD-finger 108.7 1.9e-34 2 PF00628.19.ls PHD-finger 112.5 1.1e-30 2 PF02928.6.ls C5HC2 zinc finger 107.5 3.7e-29 1 PF02928.6.fs C5HC2 zinc finger 105.6 1.4e-28 1 PF02375.7.ls jmjN domain 96.0 1e-25 1 PF02375.7.fs jmjN domain 94.2 3.6e-25 1 PF01388.11.fs ARID/BRIGHT DNA binding domain 57.3 1.7e-15 1 PF01388.11.ls ARID/BRIGHT DNA binding domain 16.6 3.3e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02375.7.ls 1/1 15 59 .. 1 53 [] 96.0 1e-25 PF02375.7.fs 1/1 15 59 .. 1 53 [] 94.2 3.6e-25 PF01388.11.fs 1/1 76 117 .. 1 43 [. 57.3 1.7e-15 PF01388.11.ls 1/1 76 172 .. 1 116 [] 16.6 3.3e-06 PF00628.19.ls 1/2 259 307 .. 1 51 [] 68.1 2.6e-17 PF00628.19.fs 1/2 259 307 .. 1 51 [] 66.2 7.8e-21 PF02373.13.ls 1/1 434 550 .. 1 126 [] 222.7 7.8e-64 PF02373.13.fs 1/1 434 550 .. 1 126 [] 220.7 9.2e-65 PF02928.6.fs 1/1 640 693 .. 1 59 [] 105.6 1.4e-28 PF02928.6.ls 1/1 640 693 .. 1 59 [] 107.5 3.7e-29 PF08429.1.ls 1/1 704 1030 .. 1 394 [] 472.5 4.7e-139 PF08429.1.fs 1/2 704 1030 .. 1 394 [] 470.8 1.6e-138 PF00628.19.fs 2/2 1117 1180 .. 1 51 [] 42.5 3.2e-13 PF00628.19.ls 2/2 1117 1180 .. 1 51 [] 44.4 3.5e-10 Alignments of top-scoring domains: PF02375.7.ls: domain 1 of 1, from 15 to 59: score 96.0, E = 1e-25 *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk PvF+P++ EF Dpl YIak irp Aek+Gi+K++PP++W + pF1KA0234 15 PVFEPSWAEFQDPLGYIAK--IRPIAEKSGICKIRPPADW------Q 53 Ppcald<-* Pp+a++ pF1KA0234 54 PPFAVE 59 PF02375.7.fs: domain 1 of 1, from 15 to 59: score 94.2, E = 3.6e-25 *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk PvF+P++ EF Dpl YIak irp Aek+Gi+K++PP++W + pF1KA0234 15 PVFEPSWAEFQDPLGYIAK--IRPIAEKSGICKIRPPADW------Q 53 Ppcald<-* Pp+a++ pF1KA0234 54 PPFAVE 59 PF01388.11.fs: domain 1 of 1, from 76 to 117: score 57.3, E = 1.7e-15 *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyr<-* eaqtr+++++ld+++kF+e +g+ +kiP+v++k+LDLY+L++ pF1KA0234 76 EAQTRVKLNYLDQIAKFWEIQGS-SLKIPNVERKILDLYSLSK 117 PF01388.11.ls: domain 1 of 1, from 76 to 172: score 16.6, E = 3.3e-06 *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke eaqtr+++++ld+++kF+e +g+ +kiP+v++k+LDLY+L++ + pF1KA0234 76 EAQTRVKLNYLDQIAKFWEIQGS-SLKIPNVERKILDLYSLSKQCNT 121 kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE ++V +++ ++ ip + s PS ++s + pF1KA0234 122 HPFDNEVKDKE-----YKPHSIPLRQS-VQPSKFSS------------YS 153 cyeeeenlrdeteaaddme<-* ++ + +++ e + +d+ + pF1KA0234 154 RRAKRLQPDPEPTEEDIEK 172 PF00628.19.ls: domain 1 of 2, from 259 to 307: score 68.1, E = 2.6e-17 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC +C+vC++ d++++ll+CDgCd+ +H++Cl ppl+ eip + W C pF1KA0234 259 ICQVCSR--GDEDDKLLFCDGCDDNYHIFCLLPPLP--EIPRgiWRC 301 peCkpk<-* p+C+ + pF1KA0234 302 PKCILA 307 PF00628.19.fs: domain 1 of 2, from 259 to 307: score 66.2, E = 7.8e-21 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC +C+vC++ d++++ll+CDgCd+ +H++Cl ppl+ eip + W C pF1KA0234 259 ICQVCSR--GDEDDKLLFCDGCDDNYHIFCLLPPLP--EIPRgiWRC 301 peCkpk<-* p+C+ + pF1KA0234 302 PKCILA 307 PF02373.13.ls: domain 1 of 1, from 434 to 550: score 222.7, E = 7.8e-64 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek wlYvGm fS ++wHiEd+++ySinylh+g+pk+WYg+Ps +ae++e pF1KA0234 434 WLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLE- 479 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ +v++ P+l +++qpdl l++lvtl++P+ L+++g+pv r++Q pF1KA0234 480 --EVMKML--TPEL-FDSQPDL-LHQLVTLMNPNT--LMSHGVPVVRTNQ 521 kpGEfVitfPgayHavfNlGfniaeavNF<-* ++GEfVitfP+ayH++fN G+n+aeavNF pF1KA0234 522 CAGEFVITFPRAYHSGFNQGYNFAEAVNF 550 PF02373.13.fs: domain 1 of 1, from 434 to 550: score 220.7, E = 9.2e-65 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek wlYvGm fS ++wHiEd+++ySinylh+g+pk+WYg+Ps +ae++e pF1KA0234 434 WLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLE- 479 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ +v++ P+l +++qpdl l++lvtl++P+ L+++g+pv r++Q pF1KA0234 480 --EVMKML--TPEL-FDSQPDL-LHQLVTLMNPNT--LMSHGVPVVRTNQ 521 kpGEfVitfPgayHavfNlGfniaeavNF<-* ++GEfVitfP+ayH++fN G+n+aeavNF pF1KA0234 522 CAGEFVITFPRAYHSGFNQGYNFAEAVNF 550 PF02928.6.fs: domain 1 of 1, from 640 to 693: score 105.6, E = 1.4e-28 *->CqiCkttlyLSAvvCs.CspnklvCLeCALRHvkdLCssCepkdltL C++Cktt++LSA++C++C p+ lvCL+ H++dLC+ C++++++L pF1KA0234 640 CIKCKTTCFLSALACYdC-PDGLVCLS----HINDLCK-CSSSRQYL 680 lYRYtlDeLpsLv<-* +YRYtlDeLp ++ pF1KA0234 681 RYRYTLDELPTML 693 PF02928.6.ls: domain 1 of 1, from 640 to 693: score 107.5, E = 3.7e-29 *->CqiCkttlyLSAvvCs.CspnklvCLeCALRHvkdLCssCepkdltL C++Cktt++LSA++C++C p+ lvCL+ H++dLC+ C++++++L pF1KA0234 640 CIKCKTTCFLSALACYdC-PDGLVCLS----HINDLCK-CSSSRQYL 680 lYRYtlDeLpsLv<-* +YRYtlDeLp ++ pF1KA0234 681 RYRYTLDELPTML 693 PF08429.1.ls: domain 1 of 1, from 704 to 1030: score 472.5, E = 4.7e-139 *->etWrervreaLeaeskrLkrsLkelreLlsEgILNEkikfplFpeLl +tW+++vr aLe+e++r krs++elr+L+sE+ ++++fp+ +eLl pF1KA0234 704 DTWANKVRVALEVEDGR-KRSFEELRALESEA---RERRFPN-SELL 745 enLrafvqeAeswvekaqqLlsrKmqqtRrktgkavpagrrkkskaasvd ++L++++ e e+++ ++ +L s++ ++ pF1KA0234 746 QRLKNCLSEVEACIAQVLGLVSGQ-VAR---------------------- 772 deksrnkrtveeLraLlkqadsLpFdcpeliaqLkelleeiEeFreraqe ++ ++t++eLr Ll+q+ sLp+ +++ i +k++le++E+++ +a+e pF1KA0234 773 --MDTPQLTLTELRVLLEQMGSLPCAMHQ-IGDVKDVLEQVEAYQAEARE 819 aLseeleslslqecesLleeGsslgvelPEleeLrkyleqakWldeYLIv aL++ ++ s + + sLle G++lgve+PE+++L++++eqa+Wlde v pF1KA0234 820 ALATLPS--SPGLLRSLLERGQQLGVEVPEAHQLQQQVEQAQWLDE---V 864 kestpwaststMEKDIDFEYKlrltlddvreLideGvslglpePadnkam k++ +a++ r +l+ ++ L+++G+++++++ +++ka+ pF1KA0234 865 KQA--LAPSAH-----------RGSLVIMQGLLVMGAKIASSP-SVDKAR 900 aeLqelltkaeaWeekAkelLkyasqnhsldkLeslWkskeasnwfipvs aeLqellt+ae+WeekA+ +L+ a+q+h +++Le++ ++e++n ipv+ pF1KA0234 901 AELQELLTIAERWEEKAHFCLE-ARQKHPPATLEAI--IRETEN--IPVH 945 lpnlrklkdaLqkarewikqvesLqsgldlkrsadpdgdsvptldelkel lpn+++lk+aL+ka++wi++v ++q+ gd++p+ld+l++l pF1KA0234 946 LPNIQALKEALTKAQAWIADVDEIQN-----------GDHYPCLDDLEGL 984 vaageelpvklSEelrqLekevarveaWrerakklFgKkNapltlLe<-* va+g++lpv l EelrqLe +v+++++Wre+a+k+F+KkN+++tlLe pF1KA0234 985 VAVGRDLPVGL-EELRQLELQVLTAHSWREKASKTFLKKNSCYTLLE 1030 PF08429.1.fs: domain 1 of 2, from 704 to 1030: score 470.8, E = 1.6e-138 *->etWrervreaLeaeskrLkrsLkelreLlsEgILNEkikfplFpeLl +tW+++vr aLe+e++r krs++elr+L+sE+ ++++fp+ +eLl pF1KA0234 704 DTWANKVRVALEVEDGR-KRSFEELRALESEA---RERRFPN-SELL 745 enLrafvqeAeswvekaqqLlsrKmqqtRrktgkavpagrrkkskaasvd ++L++++ e e+++ ++ +L s++ ++ pF1KA0234 746 QRLKNCLSEVEACIAQVLGLVSGQ-VAR---------------------- 772 deksrnkrtveeLraLlkqadsLpFdcpeliaqLkelleeiEeFreraqe ++ ++t++eLr Ll+q+ sLp+ +++ i +k++le++E+++ +a+e pF1KA0234 773 --MDTPQLTLTELRVLLEQMGSLPCAMHQ-IGDVKDVLEQVEAYQAEARE 819 aLseeleslslqecesLleeGsslgvelPEleeLrkyleqakWldeYLIv aL++ ++ s + + sLle G++lgve+PE+++L++++eqa+Wlde v pF1KA0234 820 ALATLPS--SPGLLRSLLERGQQLGVEVPEAHQLQQQVEQAQWLDE---V 864 kestpwaststMEKDIDFEYKlrltlddvreLideGvslglpePadnkam k++ +a++ r +l+ ++ L+++G+++++++ +++ka+ pF1KA0234 865 KQA--LAPSAH-----------RGSLVIMQGLLVMGAKIASSP-SVDKAR 900 aeLqelltkaeaWeekAkelLkyasqnhsldkLeslWkskeasnwfipvs aeLqellt+ae+WeekA+ +L+ a+q+h +++Le++ ++e++n ipv+ pF1KA0234 901 AELQELLTIAERWEEKAHFCLE-ARQKHPPATLEAI--IRETEN--IPVH 945 lpnlrklkdaLqkarewikqvesLqsgldlkrsadpdgdsvptldelkel lpn+++lk+aL+ka++wi++v ++q+ gd++p+ld+l++l pF1KA0234 946 LPNIQALKEALTKAQAWIADVDEIQN-----------GDHYPCLDDLEGL 984 vaageelpvklSEelrqLekevarveaWrerakklFgKkNapltlLe<-* va+g++lpv l EelrqLe +v+++++Wre+a+k+F+KkN+++tlLe pF1KA0234 985 VAVGRDLPVGL-EELRQLELQVLTAHSWREKASKTFLKKNSCYTLLE 1030 PF00628.19.fs: domain 2 of 2, from 1117 to 1180: score 42.5, E = 3.2e-13 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..... +C vCg+ ag lqCD C +wfH+ C++ p + ++++ +++ pF1KA0234 1117 IC-VCGQ--VPAGVGVLQCDLCQDWFHGQCVSVPHLLTSPKPsltss 1160 ...........WyCpeCkpk<-* + + +++++Cp C+++ pF1KA0234 1161 pllawwewdtkFLCPLCMRS 1180 PF00628.19.ls: domain 2 of 2, from 1117 to 1180: score 44.4, E = 3.5e-10 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..... +C vCg+ ag lqCD C +wfH+ C++ p + ++++ +++ pF1KA0234 1117 IC-VCGQ--VPAGVGVLQCDLCQDWFHGQCVSVPHLLTSPKPsltss 1160 ...........WyCpeCkpk<-* + + +++++Cp C+++ pF1KA0234 1161 pllawwewdtkFLCPLCMRS 1180 //