Result of FASTA (ccds) for pF1KA0109
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0109, 435 aa
  1>>>pF1KA0109 435 - 435 aa - 435 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9914+/-0.0013; mu= 13.1325+/- 0.078
 mean_var=62.6462+/-12.138, 0's: 0 Z-trim(99.4): 40  B-trim: 0 in 0/49
 Lambda= 0.162042
 statistics sampled from 5680 (5711) to 5680 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.527), E-opt: 0.2 (0.175), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS43177.1 AP2M1 gene_id:1173|Hs108|chr3          ( 435) 2853 676.3 1.6e-194
CCDS43178.1 AP2M1 gene_id:1173|Hs108|chr3          ( 433) 2822 669.0 2.5e-192
CCDS82880.1 AP2M1 gene_id:1173|Hs108|chr3          ( 460) 2686 637.2 9.8e-183
CCDS46008.1 AP1M1 gene_id:8907|Hs108|chr19         ( 435) 1072 259.9 3.6e-69
CCDS77234.1 AP1M2 gene_id:10053|Hs108|chr19        ( 425)  772 189.8 4.5e-48
CCDS45964.1 AP1M2 gene_id:10053|Hs108|chr19        ( 423)  769 189.1 7.3e-48
CCDS12342.1 AP1M1 gene_id:8907|Hs108|chr19         ( 423)  761 187.2 2.7e-47
CCDS5685.1 AP4M1 gene_id:9179|Hs108|chr7           ( 453)  559 140.0 4.7e-33
CCDS6125.1 AP3M2 gene_id:10947|Hs108|chr8          ( 418)  393 101.2 2.1e-21
CCDS7342.1 AP3M1 gene_id:26985|Hs108|chr10         ( 418)  383 98.8 1.1e-20


>>CCDS43177.1 AP2M1 gene_id:1173|Hs108|chr3               (435 aa)
 initn: 2853 init1: 2853 opt: 2853  Z-score: 3605.6  bits: 676.3 E(32554): 1.6e-194
Smith-Waterman score: 2853; 100.0% identity (100.0% similar) in 435 aa overlap (1-435:1-435)

               10        20        30        40        50        60
pF1KA0 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
              370       380       390       400       410       420

              430     
pF1KA0 WVRYIGRSGIYETRC
       :::::::::::::::
CCDS43 WVRYIGRSGIYETRC
              430     

>>CCDS43178.1 AP2M1 gene_id:1173|Hs108|chr3               (433 aa)
 initn: 1931 init1: 1931 opt: 2822  Z-score: 3566.4  bits: 669.0 E(32554): 2.5e-192
Smith-Waterman score: 2822; 99.5% identity (99.5% similar) in 435 aa overlap (1-435:1-433)

               10        20        30        40        50        60
pF1KA0 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
       :::::::::::::::::::::  :::::::::::::::::::::::::::::::::::::
CCDS43 PQNSETGALKTFITQQGIKSQ--TKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES
              130       140         150       160       170        

              190       200       210       220       230       240
pF1KA0 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS
      180       190       200       210       220       230        

              250       260       270       280       290       300
pF1KA0 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK
      240       250       260       270       280       290        

              310       320       330       340       350       360
pF1KA0 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG
      300       310       320       330       340       350        

              370       380       390       400       410       420
pF1KA0 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK
      360       370       380       390       400       410        

              430     
pF1KA0 WVRYIGRSGIYETRC
       :::::::::::::::
CCDS43 WVRYIGRSGIYETRC
      420       430   

>>CCDS82880.1 AP2M1 gene_id:1173|Hs108|chr3               (460 aa)
 initn: 2839 init1: 2686 opt: 2686  Z-score: 3394.2  bits: 637.2 E(32554): 9.8e-183
Smith-Waterman score: 2793; 94.6% identity (94.6% similar) in 460 aa overlap (1-435:1-460)

               10        20                                 30     
pF1KA0 MIGGLFIYNHKGEVLISRVYRDDIG-------------------------RNAVDAFRVN
       :::::::::::::::::::::::::                         ::::::::::
CCDS82 MIGGLFIYNHKGEVLISRVYRDDIGSRQAADSAVFSSSGPFPGEWLEANRRNAVDAFRVN
               10        20        30        40        50        60

          40        50        60        70        80        90     
pF1KA0 VIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGK
               70        80        90       100       110       120

         100       110       120       130       140       150     
pF1KA0 ISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQV
              130       140       150       160       170       180

         160       170       180       190       200       210     
pF1KA0 TGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG
              190       200       210       220       230       240

         220       230       240       250       260       270     
pF1KA0 MNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELM
              250       260       270       280       290       300

         280       290       300       310       320       330     
pF1KA0 RYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQV
              310       320       330       340       350       360

         340       350       360       370       380       390     
pF1KA0 ICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFA
              370       380       390       400       410       420

         400       410       420       430     
pF1KA0 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC
       ::::::::::::::::::::::::::::::::::::::::
CCDS82 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC
              430       440       450       460

>>CCDS46008.1 AP1M1 gene_id:8907|Hs108|chr19              (435 aa)
 initn: 953 init1: 545 opt: 1072  Z-score: 1355.4  bits: 259.9 E(32554): 3.6e-69
Smith-Waterman score: 1072; 38.5% identity (70.9% similar) in 444 aa overlap (5-434:6-433)

                10        20        30        40         50        
pF1KA0  MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHV
            ... . ::.::: : :: :.  . :. :   ... ... . ::.   . . :. .
CCDS46 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KA0 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF
       :..:..:.:..:.:. ...:: ::::. .:.. :: .. ::.:..:::.:::::::..::
CCDS46 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KA0 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVL
       ::::....  :. .:::.:    :. .    .  . ::. ..:: ::::::.::.::::.
CCDS46 GYPQTTDSKILQEYITQEG----HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVI
              130           140       150       160       170      

      180                   190       200       210       220      
pF1KA0 ESVNLL------------MSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG
       ::::::            .: .:.:: ... : . :. .:::::: ..:.:::..... :
CCDS46 ESVNLLGKYPGVGWLGHTVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTG
        180       190       200       210       220       230      

        230       240       250       260       270       280      
pF1KA0 KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILP
       .:      ::  .:. ..:  ::::::::.:...:.::::::::::::: :: .  .   
CCDS46 RG------KS--KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPL
              240         250       260       270       280        

        290       300       310       320       330       340      
pF1KA0 FRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKA
       . .  .... .....:  .  ::.::    :...:..::.: .... .     :..:.  
CCDS46 IWIESVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVP
      290       300       310       320       330       340        

        350       360       370       380       390        400     
pF1KA0 SENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLK
        .. :::.:: . : ::  . :.. :  .. . : ..::::..::.: :. ::..:::::
CCDS46 ENSEIVWSIKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLK
      350       360       370       380       390       400        

         410       420       430      
pF1KA0 VFEPKLNYSDHDVIKWVRYIGRSGIYETRC 
       ..:     : .... ::::: ..: :. :  
CCDS46 IIEK----SGYQALPWVRYITQNGDYQLRTQ
      410           420       430     

>>CCDS77234.1 AP1M2 gene_id:10053|Hs108|chr19             (425 aa)
 initn: 1089 init1: 382 opt: 772  Z-score: 976.5  bits: 189.8 E(32554): 4.5e-48
Smith-Waterman score: 1109; 38.8% identity (74.1% similar) in 433 aa overlap (5-434:6-423)

                10        20        30        40         50        
pF1KA0  MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHV
            .:: . ::. :::: :. :.. . .. :   ... ... . .:. . ... :. .
CCDS77 MSASAVFILDVKGKPLISRNYKGDVAMSKIEHFMPLLVQREEEGALAPLLSHGQVHFLWI
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KA0 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF
       :.::..:.:.:..:.::..:. ::::  .:.  :: .. ::.:..:::..::::::..::
CCDS77 KHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDELMDF
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KA0 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVL
       :.::....  :. .::::. :     .  .:..   ::. ..:: :::::..::.:.::.
CCDS77 GFPQTTDSKILQEYITQQSNK----LETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVI
              130       140           150       160       170      

      180       190       200       210       220       230        
pF1KA0 ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK
       ::::::.. .:.:: ... : . .: .:::::: ..:.::....:  :       : : .
CCDS77 ESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTG------LSGSKN
        180       190       200       210       220             230

      240       250       260       270       280       290        
pF1KA0 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR
       .:. ..:  ::::::::.::..:.::::::::.:::: :: . ..   . .  .... ..
CCDS77 KSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSH
              240       250       260       270       280       290

      300       310       320       330       340       350        
pF1KA0 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM
       ...:. :  :..:: . .:. .:. .:.: .... .     :.:::   .:...:.:: .
CCDS77 SRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSIKSF
              300       310       320       330       340       350

      360       370       380        390        400       410      
pF1KA0 AGMKESQISAEIELLPTNDKKKW-ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDH
        : ::  . :.. : :. .:..  .::::...::.: :. ::..:::.:..:     : .
CCDS77 PGGKEYLMRAHFGL-PSVEKEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEK----SGY
              360        370       380       390       400         

        420       430      
pF1KA0 DVIKWVRYIGRSGIYETRC 
       ... ::::: .:: :. :  
CCDS77 QALPWVRYITQSGDYQLRTS
         410       420     

>>CCDS45964.1 AP1M2 gene_id:10053|Hs108|chr19             (423 aa)
 initn: 1092 init1: 382 opt: 769  Z-score: 972.8  bits: 189.1 E(32554): 7.3e-48
Smith-Waterman score: 1106; 38.6% identity (74.1% similar) in 433 aa overlap (5-434:6-421)

                10        20        30        40         50        
pF1KA0  MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHV
            .:: . ::. :::: :. :.. . .. :   ... ... . .:. . ... :. .
CCDS45 MSASAVFILDVKGKPLISRNYKGDVAMSKIEHFMPLLVQREEEGALAPLLSHGQVHFLWI
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KA0 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF
       :.::..:.:.:..:.::..:. ::::  .:.  :: .. ::.:..:::..::::::..::
CCDS45 KHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDELMDF
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KA0 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVL
       :.::....  :. .::::. :     .  .:..   ::. ..:: :::::..::.:.::.
CCDS45 GFPQTTDSKILQEYITQQSNK----LETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVI
              130       140           150       160       170      

      180       190       200       210       220       230        
pF1KA0 ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK
       ::::::.. .:.:: ... : . .: .:::::: ..:.::....:  :.        : .
CCDS45 ESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGR--------SKN
        180       190       200       210       220                

      240       250       260       270       280       290        
pF1KA0 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR
       .:. ..:  ::::::::.::..:.::::::::.:::: :: . ..   . .  .... ..
CCDS45 KSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSH
      230       240       250       260       270       280        

      300       310       320       330       340       350        
pF1KA0 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM
       ...:. :  :..:: . .:. .:. .:.: .... .     :.:::   .:...:.:: .
CCDS45 SRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSIKSF
      290       300       310       320       330       340        

      360       370       380        390        400       410      
pF1KA0 AGMKESQISAEIELLPTNDKKKW-ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDH
        : ::  . :.. : :. .:..  .::::...::.: :. ::..:::.:..:     : .
CCDS45 PGGKEYLMRAHFGL-PSVEKEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEK----SGY
      350       360        370       380       390       400       

        420       430      
pF1KA0 DVIKWVRYIGRSGIYETRC 
       ... ::::: .:: :. :  
CCDS45 QALPWVRYITQSGDYQLRTS
           410       420   

>>CCDS12342.1 AP1M1 gene_id:8907|Hs108|chr19              (423 aa)
 initn: 1087 init1: 365 opt: 761  Z-score: 962.7  bits: 187.2 E(32554): 2.7e-47
Smith-Waterman score: 1106; 39.6% identity (72.9% similar) in 432 aa overlap (5-434:6-421)

                10        20        30        40         50        
pF1KA0  MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHV
            ... . ::.::: : :: :.  . :. :   ... ... . ::.   . . :. .
CCDS12 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KA0 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF
       :..:..:.:..:.:. ...:: ::::. .:.. :: .. ::.:..:::.:::::::..::
CCDS12 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KA0 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVL
       ::::....  :. .:::.:    :. .    .  . ::. ..:: ::::::.::.::::.
CCDS12 GYPQTTDSKILQEYITQEG----HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVI
              130           140       150       160       170      

      180       190       200       210       220       230        
pF1KA0 ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK
       ::::::.: .:.:: ... : . :. .:::::: ..:.:::..... :.:      ::  
CCDS12 ESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG------KS--
        180       190       200       210       220                

      240       250       260       270       280       290        
pF1KA0 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR
       .:. ..:  ::::::::.:...:.::::::::::::: :: .  .   . .  .... ..
CCDS12 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSH
      230       240       250       260       270       280        

      300       310       320       330       340       350        
pF1KA0 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM
       ...:  .  ::.::    :...:..::.: .... .     :..:.   .. :::.:: .
CCDS12 SRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSF
      290       300       310       320       330       340        

      360       370       380       390        400       410       
pF1KA0 AGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHD
        : ::  . :.. :  .. . : ..::::..::.: :. ::..:::::..:     : ..
CCDS12 PGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK----SGYQ
      350       360       370       380       390       400        

       420       430      
pF1KA0 VIKWVRYIGRSGIYETRC 
       .. ::::: ..: :. :  
CCDS12 ALPWVRYITQNGDYQLRTQ
          410       420   

>>CCDS5685.1 AP4M1 gene_id:9179|Hs108|chr7                (453 aa)
 initn: 474 init1: 136 opt: 559  Z-score: 706.9  bits: 140.0 E(32554): 4.7e-33
Smith-Waterman score: 643; 29.2% identity (64.1% similar) in 465 aa overlap (1-434:1-452)

               10        20         30        40        50         
pF1KA0 MIGGLFIYNHKGEVLISRVYRDDIG-RNAVDAFRVNVIHARQQVRSPVTNIAR-TSFFHV
       ::. .:: . ::. :: . .: : : :.... :  ..     . .:::.   .   :.:.
CCDS56 MISQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGD-ESPVVMHHHGRHFIHI
               10        20        30        40         50         

       60        70        80        90       100       110        
pF1KA0 KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF
       ..:...:...:..::.   ..:.: ..  ... : :...: .:. : .:.::::::.::.
CCDS56 RHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDY
      60        70        80        90       100       110         

      120       130       140       150               160          
pF1KA0 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQI--------TSQVTGQIGWRREGIKYR-
       :: :.. :  :..::  ... :.  .  . :..         :.:. . .  :  .. : 
CCDS56 GYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRS
     120       130       140       150       160       170         

         170       180       190       200       210       220     
pF1KA0 ----RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQ
           .::.::::.: ...:.. .:..:.. :.:.. .::.: .  : ..:..... .   
CCDS56 DQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCV---
     180       190       200       210       220       230         

         230       240       250       260       270       280     
pF1KA0 GKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDII-
       ::   .:    :  .: .:. .::. : :..:.:.: . . ::.::. .:::. . :.  
CCDS56 GK---SELRGYGP-GIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPS
           240        250       260       270       280       290  

           290        300       310       320       330       340  
pF1KA0 -LPFRVIPLVR-EVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKA
        ::::..: :. . :  .:.: . .. ..  .  : ......: : .. ...    . . 
CCDS56 PLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQ
            300       310       320       330       340       350  

            350       360       370              380           390 
pF1KA0 KYKASENAIVWKIKRMAGMKESQISAEIELL-------PTNDKKKWARP----PISMNFE
       : . .:.:. : . :. :   ::.:. ...        :..  .  : :    : :..::
CCDS56 KAELAEGALRWDLPRVQGG--SQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFE
            360       370         380       390       400       410

              400        410       420       430     
pF1KA0 VP-FAPSGLKVRYLKV-FEPKLNYSDHDVIKWVRYIGRSGIYETRC
       .:  . :::.::.:.. :.:  : . :   ::::....:  :  : 
CCDS56 LPRHTCSGLQVRFLRLAFRPCGNANPH---KWVRHLSHSDAYVIRI
              420       430          440       450   

>>CCDS6125.1 AP3M2 gene_id:10947|Hs108|chr8               (418 aa)
 initn: 514 init1: 205 opt: 393  Z-score: 497.8  bits: 101.2 E(32554): 2.1e-21
Smith-Waterman score: 578; 26.4% identity (59.3% similar) in 447 aa overlap (1-434:1-417)

               10        20        30        40         50         
pF1KA0 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQ-QVRSPVTNIARTSFFHVK
       :: .::. : .:.... . ... ..:.. : :     .: . .   ::    .  .. : 
CCDS61 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KA0 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG
       : .:...:: . .:   .:.:::... :..  :::  ::  ::.: :..::.:.:.:: :
CCDS61 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG
               70        80        90       100       110       120

     120       130        140       150        160          170    
pF1KA0 YPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQIG---WRREGIKYRRNELF
       .:  .:.. :: .:    : ..  .:   .... .:. :::..   ::: :.::  :: .
CCDS61 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY
              130       140       150       160       170       180

          180       190       200       210        220       230   
pF1KA0 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET
       .::.: .. ... .:....:...: .     :.:::.  .. :: ..             
CCDS61 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL-------------
              190       200       210       220                    

           240       250       260       270       280             
pF1KA0 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRV--
                .:: .:: :::.....::: .:::::::.:.:. :... .  . .:  :  
CCDS61 ---------LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKH
                230       240       250       260       270        

      290       300       310       320       330       340        
pF1KA0 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE
        : .    .  ..:. :  :...  ..  . . :    : .. ....   .:   .    
CCDS61 NISFRDSSSLGRFEITVGPKQTMGKTI--EGVTVTSQMPKGVLNMSLTPSQGTHTFDPVT
      280       290       300         310       320       330      

      350       360       370       380       390        400       
pF1KA0 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVF
       . . : . ..  .:  .... . :    .:     : :...:..  .: :::::  : ..
CCDS61 KMLSWDVGKINPQKLPSLKGTMSLQAGASKPD-ENPTINLQFKIQQLAISGLKVNRLDMY
        340       350       360        370       380       390     

       410       420       430     
pF1KA0 EPKLNYSDHDVIKWVRYIGRSGIYETRC
         :     .  .: ..:. ..: ...: 
CCDS61 GEK-----YKPFKGIKYMTKAGKFQVRT
              400       410        

>>CCDS7342.1 AP3M1 gene_id:26985|Hs108|chr10              (418 aa)
 initn: 490 init1: 178 opt: 383  Z-score: 485.2  bits: 98.8 E(32554): 1.1e-20
Smith-Waterman score: 591; 26.2% identity (61.7% similar) in 447 aa overlap (1-434:1-417)

               10        20        30         40        50         
pF1KA0 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAF-RVNVIHARQQVRSPVTNIARTSFFHVK
       :: .::. : .:.... . ... ..... : : ...   :  .   :: .  .  .. . 
CCDS73 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KA0 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG
       :.......: . .:   .:.:::... :..  :::. ::  ::.: :..::::.:.:: :
CCDS73 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
               70        80        90       100       110       120

     120       130        140       150           160       170    
pF1KA0 YPQNSETGALKTFITQQGI-KSQHQTKEEQSQITSQV-TGQ---IGWRREGIKYRRNELF
       .:  .:.. :: .:    : .:  ..   .:.. . . :::   : ::: :.::  :: .
CCDS73 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
              130       140       150       160       170       180

          180       190       200       210        220       230   
pF1KA0 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADET
       .::.: .. ... .:... :...: .     :::::. ... :: ..             
CCDS73 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------------
              190       200       210       220                    

           240       250       260       270       280             
pF1KA0 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRV--
                .:: .:: :.:.....::: .:::::::.:.:. ::....  . .:  :  
CCDS73 ---------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKH
                230       240       250       260       270        

      290       300       310       320       330       340        
pF1KA0 -IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE
        : . .. .  .... .  :.:.  ..  . : : .  :  . ....   .:.  .    
CCDS73 SISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMNLTPTQGSYTFDPVT
      280       290       300         310       320       330      

      350       360       370       380       390        400       
pF1KA0 NAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVF
       ....: . ... .:  .... ..:  ..  :    : ....:..  .: :::::  : ..
CCDS73 KVLTWDVGKITPQKLPSLKGLVNL-QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMY
        340       350       360        370       380       390     

       410       420       430     
pF1KA0 EPKLNYSDHDVIKWVRYIGRSGIYETRC
         :     .  .: :.:. ..: ...: 
CCDS73 GEK-----YKPFKGVKYVTKAGKFQVRT
              400       410        




435 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:05:49 2016 done: Wed Nov  2 18:05:49 2016
 Total Scan time:  2.660 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com