Result of FASTA (omim) for pF1KA0060
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0060, 289 aa
  1>>>pF1KA0060 289 - 289 aa - 289 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0668+/-0.000382; mu= 16.3618+/- 0.024
 mean_var=60.2494+/-12.251, 0's: 0 Z-trim(111.5): 16  B-trim: 133 in 1/52
 Lambda= 0.165233
 statistics sampled from 20058 (20066) to 20058 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.235), width:  16
 Scan time:  5.900

The best scores are:                                      opt bits E(85289)
XP_006714810 (OMIM: 601798) PREDICTED: glucosamine ( 289) 1927 467.9  1e-131
NP_005462 (OMIM: 601798) glucosamine-6-phosphate i ( 289) 1927 467.9  1e-131
XP_011535839 (OMIM: 601798) PREDICTED: glucosamine ( 289) 1927 467.9  1e-131
XP_005268405 (OMIM: 601798) PREDICTED: glucosamine ( 318) 1927 467.9 1.1e-131
NP_612208 (OMIM: 613222) glucosamine-6-phosphate i ( 276) 1656 403.3 2.7e-112
NP_001257810 (OMIM: 613222) glucosamine-6-phosphat ( 206) 1264 309.8 2.9e-84
NP_001257809 (OMIM: 613222) glucosamine-6-phosphat ( 242) 1237 303.4 2.8e-82


>>XP_006714810 (OMIM: 601798) PREDICTED: glucosamine-6-p  (289 aa)
 initn: 1927 init1: 1927 opt: 1927  Z-score: 2485.8  bits: 467.9 E(85289): 1e-131
Smith-Waterman score: 1927; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)

               10        20        30        40        50        60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
              190       200       210       220       230       240

              250       260       270       280         
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
              250       260       270       280         

>>NP_005462 (OMIM: 601798) glucosamine-6-phosphate isome  (289 aa)
 initn: 1927 init1: 1927 opt: 1927  Z-score: 2485.8  bits: 467.9 E(85289): 1e-131
Smith-Waterman score: 1927; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)

               10        20        30        40        50        60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
              190       200       210       220       230       240

              250       260       270       280         
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
              250       260       270       280         

>>XP_011535839 (OMIM: 601798) PREDICTED: glucosamine-6-p  (289 aa)
 initn: 1927 init1: 1927 opt: 1927  Z-score: 2485.8  bits: 467.9 E(85289): 1e-131
Smith-Waterman score: 1927; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)

               10        20        30        40        50        60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
              190       200       210       220       230       240

              250       260       270       280         
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
              250       260       270       280         

>>XP_005268405 (OMIM: 601798) PREDICTED: glucosamine-6-p  (318 aa)
 initn: 1927 init1: 1927 opt: 1927  Z-score: 2485.2  bits: 467.9 E(85289): 1.1e-131
Smith-Waterman score: 1927; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:30-318)

                                            10        20        30 
pF1KA0                              MKLIILEHYSQASEWAAKYIRNRIIQFNPGP
                                    :::::::::::::::::::::::::::::::
XP_005 MSSFWSDYLFPFVLWGKLKTQRGSQSKDKMKLIILEHYSQASEWAAKYIRNRIIQFNPGP
               10        20        30        40        50        60

              40        50        60        70        80        90 
pF1KA0 EKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWN
               70        80        90       100       110       120

             100       110       120       130       140       150 
pF1KA0 NFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGS
              130       140       150       160       170       180

             160       170       180       190       200       210 
pF1KA0 SLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFA
              190       200       210       220       230       240

             220       230       240       250       260       270 
pF1KA0 LYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYS
              250       260       270       280       290       300

             280         
pF1KA0 IKEKETEKSQSSKKPYSD
       ::::::::::::::::::
XP_005 IKEKETEKSQSSKKPYSD
              310        

>>NP_612208 (OMIM: 613222) glucosamine-6-phosphate isome  (276 aa)
 initn: 1658 init1: 1637 opt: 1656  Z-score: 2137.0  bits: 403.3 E(85289): 2.7e-112
Smith-Waterman score: 1656; 88.0% identity (97.4% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
       :.:.::..:. ::::::::: ::::::.:: ..::::::::::::::::::::::.::: 
NP_612 MRLVILDNYDLASEWAAKYICNRIIQFKPGQDRYFTLGLPTGSTPLGCYKKLIEYHKNGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
       :::::::::::::::::::.:::::::.::::::::::: :.:.:::::::.::::::::
NP_612 LSFKYVKTFNMDEYVGLPRNHPESYHSYMWNNFFKHIDIDPNNAHILDGNAADLQAECDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
       ::.::: ::::.::::::::::::::::::::::::::.::::::::::::..:::.:.:
NP_612 FENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILANAKYFDGDLSK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_612 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTIFVCD
              190       200       210       220       230       240

              250       260       270       280         
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
       :::::::.::::::::::: :::::::::.:.:.               
NP_612 EDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN             
              250       260       270                   

>>NP_001257810 (OMIM: 613222) glucosamine-6-phosphate is  (206 aa)
 initn: 1285 init1: 1264 opt: 1264  Z-score: 1633.9  bits: 309.8 E(85289): 2.9e-84
Smith-Waterman score: 1264; 90.2% identity (98.5% similar) in 204 aa overlap (71-274:1-204)

               50        60        70        80        90       100
pF1KA0 TGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIH
                                     :::::::::.:::::::.::::::::::: 
NP_001                               MDEYVGLPRNHPESYHSYMWNNFFKHIDID
                                             10        20        30

              110       120       130       140       150       160
pF1KA0 PENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVK
       :.:.:::::::.::::::::::.::: ::::.::::::::::::::::::::::::::.:
NP_001 PNNAHILDGNAADLQAECDAFENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLK
               40        50        60        70        80        90

              170       180       190       200       210       220
pF1KA0 TLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV
       :::::::::::..:::.:.:::::::::::::::::::::::::::::::::::::::::
NP_001 TLAMDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV
              100       110       120       130       140       150

              230       240       250       260       270       280
pF1KA0 NHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKS
       :::::::::::::::.:::::::::::.::::::::::: :::::::::.:.:.      
NP_001 NHMWTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN    
              160       170       180       190       200          

                
pF1KA0 QSSKKPYSD

>>NP_001257809 (OMIM: 613222) glucosamine-6-phosphate is  (242 aa)
 initn: 1454 init1: 1230 opt: 1237  Z-score: 1598.0  bits: 303.4 E(85289): 2.8e-82
Smith-Waterman score: 1361; 76.3% identity (85.4% similar) in 274 aa overlap (1-274:1-240)

               10        20        30        40        50        60
pF1KA0 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD
       :.:.::..:. ::::::::: ::::::.:: ..:::::::::                  
NP_001 MRLVILDNYDLASEWAAKYICNRIIQFKPGQDRYFTLGLPTG------------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KA0 LSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDA
                       :::.:::::::.::::::::::: :.:.:::::::.::::::::
NP_001 ----------------LPRNHPESYHSYMWNNFFKHIDIDPNNAHILDGNAADLQAECDA
                             50        60        70        80      

              130       140       150       160       170       180
pF1KA0 FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK
       ::.::: ::::.::::::::::::::::::::::::::.::::::::::::..:::.:.:
NP_001 FENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILANAKYFDGDLSK
         90       100       110       120       130       140      

              190       200       210       220       230       240
pF1KA0 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTIFVCD
        150       160       170       180       190       200      

              250       260       270       280         
pF1KA0 EDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQSSKKPYSD
       :::::::.::::::::::: :::::::::.:.:.               
NP_001 EDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN             
        210       220       230       240               




289 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 17:58:23 2016 done: Wed Nov  2 17:58:24 2016
 Total Scan time:  5.900 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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