Result of FASTA (ccds) for pFN21AE2378
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2378, 488 aa
  1>>>pF1KE2378 488 - 488 aa - 488 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8850+/-0.00104; mu= 10.6266+/- 0.063
 mean_var=116.1702+/-23.088, 0's: 0 Z-trim(107.1): 45  B-trim: 448 in 1/48
 Lambda= 0.118994
 statistics sampled from 9346 (9381) to 9346 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.288), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS43493.2 HDAC2 gene_id:3066|Hs108|chr6          ( 488) 3343 585.3 5.1e-167
CCDS360.1 HDAC1 gene_id:3065|Hs108|chr1            ( 482) 2880 505.8 4.3e-143
CCDS4264.1 HDAC3 gene_id:8841|Hs108|chr5           ( 428) 1833 326.0   5e-89
CCDS14420.1 HDAC8 gene_id:55869|Hs108|chrX         ( 377) 1089 198.2 1.3e-50
CCDS55449.1 HDAC8 gene_id:55869|Hs108|chrX         ( 286)  821 152.2 7.2e-37
CCDS55451.1 HDAC8 gene_id:55869|Hs108|chrX         ( 256)  721 135.0 9.6e-32
CCDS14306.1 HDAC6 gene_id:10013|Hs108|chrX         (1215)  384 77.5   9e-14
CCDS83163.1 HDAC9 gene_id:9734|Hs108|chr7          (1025)  368 74.7 5.2e-13
CCDS47554.1 HDAC9 gene_id:9734|Hs108|chr7          (1066)  368 74.7 5.4e-13
CCDS47553.1 HDAC9 gene_id:9734|Hs108|chr7          (1069)  368 74.7 5.4e-13
CCDS47555.1 HDAC9 gene_id:9734|Hs108|chr7          (1011)  342 70.3 1.1e-11
CCDS14088.1 HDAC10 gene_id:83933|Hs108|chr22       ( 669)  332 68.4 2.7e-11
CCDS2529.1 HDAC4 gene_id:9759|Hs108|chr2           (1084)  333 68.7 3.5e-11
CCDS45696.1 HDAC5 gene_id:10014|Hs108|chr17        (1122)  333 68.7 3.6e-11
CCDS32663.1 HDAC5 gene_id:10014|Hs108|chr17        (1123)  333 68.7 3.6e-11
CCDS41776.1 HDAC7 gene_id:51564|Hs108|chr12        ( 954)  329 68.0 5.1e-11
CCDS81685.1 HDAC7 gene_id:51564|Hs108|chr12        ( 974)  329 68.0 5.2e-11
CCDS8756.2 HDAC7 gene_id:51564|Hs108|chr12         ( 991)  329 68.0 5.3e-11


>>CCDS43493.2 HDAC2 gene_id:3066|Hs108|chr6               (488 aa)
 initn: 3343 init1: 3343 opt: 3343  Z-score: 3111.9  bits: 585.3 E(32554): 5.1e-167
Smith-Waterman score: 3343; 100.0% identity (100.0% similar) in 488 aa overlap (1-488:1-488)

               10        20        30        40        50        60
pF1KE2 MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 IFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 GGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 EKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 FSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEEDKSKDNSGEKTDTKGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEEDKSKDNSGEKTDTKGT
              430       440       450       460       470       480

               
pF1KE2 KSEQLSNP
       ::::::::
CCDS43 KSEQLSNP
               

>>CCDS360.1 HDAC1 gene_id:3065|Hs108|chr1                 (482 aa)
 initn: 2951 init1: 2811 opt: 2880  Z-score: 2682.4  bits: 505.8 E(32554): 4.3e-143
Smith-Waterman score: 2880; 85.9% identity (95.0% similar) in 483 aa overlap (1-483:1-478)

               10        20        30        40        50        60
pF1KE2 MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
       :: .::  ..:::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS36 MAQTQGT-RRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE2 TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
       .::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 NAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE2 GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
       .:::::.::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KE2 GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQ
       ::::::::::::::::::::::::::::::::::::::::::::::.:.:::::::::  
CCDS36 GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KE2 IFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLG
       ::::..::::::.::::::::::.::::::::::::::.:::::::: ::.::::.::::
CCDS36 IFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLG
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KE2 GGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYM
       :::::::::::::::::::::: ::::::::::::::::::::::::::::::::: ::.
CCDS36 GGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYL
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KE2 EKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEE
       :::::::::::::::::::::::::::::. :.::::: .:::::::: .:::::::.::
CCDS36 EKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEDDPDKRISICSSDKRIACEEE
     360       370       380       390       400       410         

              430       440       450       460       470       480
pF1KE2 FSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEEDKSKDNSGEKTDTKGT
       :::::.::::::.: .. :: ::... :..:..  ..: .: ::.:.:.   :: ..::.
CCDS36 FSDSEEEGEGGRKNSSNFKK-AKRVKTEDEKEKDPEEKKEVTEEEKTKE---EKPEAKGV
     420       430        440       450       460          470     

               
pF1KE2 KSEQLSNP
       : :     
CCDS36 KEEVKLA 
         480   

>>CCDS4264.1 HDAC3 gene_id:8841|Hs108|chr5                (428 aa)
 initn: 1131 init1: 978 opt: 1833  Z-score: 1711.8  bits: 326.0 E(32554): 5e-89
Smith-Waterman score: 1833; 58.8% identity (84.4% similar) in 422 aa overlap (10-429:3-421)

               10        20        30        40        50        60
pF1KE2 MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
                : : :.:: :.::..:: ::::::::. .::.:.:.::::.:: ...:..:
CCDS42        MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQA
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KE2 TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
       . ..: ..::..:: ::. . : ::. ..:... ::::.::::: ::::::.  ::.:. 
CCDS42 SQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQ
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KE2 GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
       ::..:: .  :.:.::::::::::: ::::::::::::..:::::::: :::::::::::
CCDS42 GATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHH
           120       130       140       150       160       170   

              190       200        210       220       230         
pF1KE2 GDGVEEAFYTTDRVMTVSFHKYGEYF-PGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYG
       ::::.:::: :::::::::::::.:: :::::. ..:: .:.:: .: :.::::::.:: 
CCDS42 GDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYK
           180       190       200       210       220       230   

     240       250       260       270       280       290         
pF1KE2 QIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLML
       ..:.:.:..:...:::. .:::::::::. ::::::::...::..::: ::.::.:::.:
CCDS42 HLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVL
           240       250       260       270       280       290   

     300       310       320       330       340       350         
pF1KE2 GGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSN-MTNQNTPE
       ::::::.:::::::::::.. ..  : .::::..:::::.::: :: . :. . :::. .
CCDS42 GGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQ
           300       310       320       330       340       350   

      360       370       380       390       400       410        
pF1KE2 YMEKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACD
       :...:.: .::::.:: :::.::.. .: : .  :  ::   : ..: . . . .:    
CCDS42 YLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDE--ADAEER-GPEENYSRPEAP
           360       370       380       390          400       410

      420       430       440       450       460       470        
pF1KE2 EEFSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEEDKSKDNSGEKTDTK
       .:: :.. ...                                                 
CCDS42 NEFYDGDHDNDKESDVEI                                          
              420                                                  

>>CCDS14420.1 HDAC8 gene_id:55869|Hs108|chrX              (377 aa)
 initn: 975 init1: 551 opt: 1089  Z-score: 1022.3  bits: 198.2 E(32554): 1.3e-50
Smith-Waterman score: 1089; 43.4% identity (77.1% similar) in 341 aa overlap (33-372:35-374)

             10        20        30        40        50        60  
pF1KE2 YSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATA
                                     :.:  :.:.:.  :.:...:.: .:. :. 
CCDS14 EEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASM
           10        20        30        40        50        60    

             70        80        90       100       110       120  
pF1KE2 EEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGA
       :::. .:.: :.. :...  .. ...  ... ...: :::. .:.:..     :.....:
CCDS14 EEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAA
           70        80        90        100       110       120   

            130       140       150       160       170       180  
pF1KE2 VKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGD
         :   .  .:.::.:: :::::.:::::::.:: ::.::.: .  .:.::.:.:.::::
CCDS14 QCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGD
           130       140       150       160       170       180   

            190       200        210       220       230       240 
pF1KE2 GVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQI
       :::.::  :..:::::.::..  .::::::. :.: :::.::.:: :..:::.::.: ::
CCDS14 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI
           190       200       210       220       230       240   

             250       260       270       280       290       300 
pF1KE2 FKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGG
        . ....:.. ..:.::::: :::...:: .  ::.:  : .::.. .  ..:  :.:::
CCDS14 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGG
           250       260       270       280       290       300   

             310       320       330       340       350       360 
pF1KE2 GGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYME
       :::.. :.:::::: :.: :   . .:.: ...:  .:::. :.:.::   ..: :. ..
CCDS14 GGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQ
           310       320       330       340       350       360   

             370       380       390       400       410       420 
pF1KE2 KIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEEF
       .: . .  ::.                                                 
CCDS14 QILNYIKGNLKHVV                                              
           370                                                     

>>CCDS55449.1 HDAC8 gene_id:55869|Hs108|chrX              (286 aa)
 initn: 842 init1: 551 opt: 821  Z-score: 775.4  bits: 152.2 E(32554): 7.2e-37
Smith-Waterman score: 821; 48.1% identity (78.9% similar) in 237 aa overlap (137-372:47-283)

        110       120       130       140       150       160      
pF1KE2 LFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLK
                                     : .::.  ..:::::::.:: ::.::.: .
CCDS55 VYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRDEASGFCYLNDAVLGILRLRR
         20        30        40        50        60        70      

        170       180       190       200        210       220     
pF1KE2 YHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAV
         .:.::.:.:.:::::::.::  :..:::::.::..  .::::::. :.: :::.::.:
CCDS55 KFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSV
         80        90       100       110       120       130      

         230       240       250       260       270       280     
pF1KE2 NFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKC
       : :..:::.::.: :: . ....:.. ..:.::::: :::...:: .  ::.:  : .::
CCDS55 NVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKC
        140       150       160       170       180       190      

         290       300       310       320       330       340     
pF1KE2 VEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLH
       .. .  ..:  :.::::::.. :.:::::: :.: :   . .:.: ...:  .:::. :.
CCDS55 LKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLE
        200       210       220       230       240       250      

         350       360       370       380       390       400     
pF1KE2 ISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKR
       :.::   ..: :. ...: . .  ::.                                 
CCDS55 ITPSCRPDRNEPHRIQQILNYIKGNLKHVV                              
        260       270       280                                    

>>CCDS55451.1 HDAC8 gene_id:55869|Hs108|chrX              (256 aa)
 initn: 578 init1: 405 opt: 721  Z-score: 683.4  bits: 135.0 E(32554): 9.6e-32
Smith-Waterman score: 721; 46.2% identity (79.5% similar) in 210 aa overlap (33-241:35-243)

             10        20        30        40        50        60  
pF1KE2 YSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATA
                                     :.:  :.:.:.  :.:...:.: .:. :. 
CCDS55 EEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASM
           10        20        30        40        50        60    

             70        80        90       100       110       120  
pF1KE2 EEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGA
       :::. .:.: :.. :...  .. ...  ... ...: :::. .:.:..     :.....:
CCDS55 EEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAA
           70        80        90        100       110       120   

            130       140       150       160       170       180  
pF1KE2 VKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGD
         :   .  .:.::.:: :::::.:::::::.:: ::.::.: .  .:.::.:.:.::::
CCDS55 QCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGD
           130       140       150       160       170       180   

            190       200        210       220       230       240 
pF1KE2 GVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQI
       :::.::  :..:::::.::..  .::::::. :.: :::.::.:: :..:::.::.: ::
CCDS55 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI
           190       200       210       220       230       240   

             250       260       270       280       290       300 
pF1KE2 FKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGG
                                                                   
CCDS55 CERYEPPAPNPGL                                               
           250                                                     

>>CCDS14306.1 HDAC6 gene_id:10013|Hs108|chrX              (1215 aa)
 initn: 242 init1: 111 opt: 384  Z-score: 360.7  bits: 77.5 E(32554): 9e-14
Smith-Waterman score: 384; 27.2% identity (55.3% similar) in 309 aa overlap (16-310:485-788)

                              10        20          30        40   
pF1KE2                MAYSQGGGKKKVCYYYDGDIGNY--YYGQGHPMKPHRIRMTHNLL
                                     :: .. :.   . . ::  :.::      :
CCDS14 VEESEEEGPWEPPVLPILTWPVLQSRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRL
          460       470       480       490       500       510    

            50        60        70        80        90       100   
pF1KE2 LNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPV
        . ::  .     :. ::  :.   :: ::.  ::. .  .  :  .. . :.    :: 
CCDS14 EELGLAGRCLTLTPRPATEAELLTCHSAEYVGHLRATEKMKTRELHRESSNFDSIYICP-
          520       530       540       550       560       570    

           110         120       130       140       150       160 
pF1KE2 FDGLFEFCQLSTGGS--VAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI
         . :   ::.::..  .. ::  ..  .  ::    : :::... : :::. :....: 
CCDS14 --STFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPG-HHAEQDAACGFCFFNSVAVAA
             580       590       600        610       620       630

                170       180       190       200           210    
pF1KE2 --LELLKYHQ-RVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFP--GTGDLRD
          . .. :  :.: .: :.:::.:... :     :. ::.:.:  : .::    :   .
CCDS14 RHAQTISGHALRILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQ
              640       650       660       670       680       690

          220       230         240       250       260       270  
pF1KE2 IGAGKGKYYAVNFPMRDG--IDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRL
       :: . :  ..::    .:  . : .:   .. ..  .   ..:  :... : :.  :: :
CCDS14 IGRAAGTGFTVNVAW-NGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPL
              700        710       720       730       740         

            280       290        300       310       320       330 
pF1KE2 GCFNLTVKGHAKCVEVVKTFNLP-LLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPY
       :  ... .:.:. ....  .    ....  :::.. ...                     
CCDS14 GGCQVSPEGYAHLTHLLMGLASGRIILILEGGYNLTSISESMAACTRSLLGDPPPLLTLP
     750       760       770       780       790       800         

             340       350       360       370       380       390 
pF1KE2 NDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAVH
                                                                   
CCDS14 RPPLSGALASITETIQVHRRYWRSLRVMKVEDREGPSSSKLVTKKAPQPAKPRLAERMTT
     810       820       830       840       850       860         

>--
 initn: 150 init1:  81 opt: 357  Z-score: 335.7  bits: 72.9 E(32554): 2.2e-12
Smith-Waterman score: 357; 27.7% identity (55.1% similar) in 292 aa overlap (30-310:106-392)

                10        20        30        40        50         
pF1KE2  MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
                                     :  :.:..  .. :.. ::  .   .. . 
CCDS14 LNLEAEALAGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARF
          80        90       100       110       120       130     

      60        70        80        90       100       110         
pF1KE2 ATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
       :  ::.   :: ::: .... .  : .:     . .    :   .      :   ..:::
CCDS14 AEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTY----DSVYLHPNSYSCACLASGSV
         140       150       160       170           180       190 

        120       130       140       150       160         170    
pF1KE2 ---AGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQ--RVLYI
          . ::   . .. ::.    : :::..:  .:.:. : ...:     . :.  ::: .
CCDS14 LRLVDAVLGAEIRNGMAIIRPPG-HHAQHSLMDGYCMFNHVAVAARYAQQKHRIRRVLIV
             200       210        220       230       240       250

          180       190       200           210       220       230
pF1KE2 DIDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPG--TGDLRDIGAGKGKYYAVNFPMR
       : :.:::.:.. .:     :.  :.:.:  :...:   ...    : :.:. :..: :  
CCDS14 DWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWN
              260       270       280       290       300       310

               240       250       260       270       280         
pF1KE2 D-GIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVV
       . :. : .:   :  ..  :   .::. :..  : :.:.::  : .  :  : :. ....
CCDS14 QVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLL
              320       330       340       350       360       370

     290       300        310       320       330       340        
pF1KE2 KTFNLPLLMLG-GGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISP
         .    :.:.  :::..: .:                                      
CCDS14 MGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGAPCRSAQASVSCALEA
              380       390       400       410       420       430

>>CCDS83163.1 HDAC9 gene_id:9734|Hs108|chr7               (1025 aa)
 initn: 227 init1: 101 opt: 368  Z-score: 347.0  bits: 74.7 E(32554): 5.2e-13
Smith-Waterman score: 421; 27.5% identity (56.4% similar) in 411 aa overlap (29-402:613-1006)

                 10        20        30        40        50        
pF1KE2   MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPH
                                     :: .  ::.   . : . ::  : :  . .
CCDS83 DRPLQPGSATGIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGR
            590       600       610       620       630       640  

       60        70        80        90             100         110
pF1KE2 KATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQM------QRFNVGEDCPVF--DGLFEF
       ::. ::.   :: :. ..: .  : . .. . ..      :.:  .  :  .  :.   .
CCDS83 KASLEEIQLVHS-EHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIW
            650        660       670       680       690       700 

                        120       130       140       150       160
pF1KE2 CQLSTGGS----------VAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLA
        .: ..:.          .:. :  .. .. .::    : :::..: : :::. :.....
CCDS83 NELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPG-HHAEESTAMGFCFFNSVAIT
             710       720       730       740        750       760

                 170       180       190       200         210     
pF1KE2 ILELLKYH---QRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPGTGDLRDI
         . :. .   ...: .:.:.:::.:...:::.   .. .:.:.:  :..:::.:   ..
CCDS83 A-KYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGSGAPNEV
               770       780       790       800       810         

         220       230           240       250       260       270 
pF1KE2 GAGKGKYYAVNFPMRDGID----DESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDR
       :.: :. : .:.    :.:    :  : . :. :.. : . ..:. :... : :.: :  
CCDS83 GTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFDALEGHT
     820       830       840       850       860       870         

               280          290       300       310       320      
pF1KE2 --LGCFNLTVK--GH-AKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP
         :: ...:.:  :: .: . ..    . : . ::   :    : : . :. :  .  . 
CCDS83 PPLGGYKVTAKCFGHLTKQLMTLADGRVVLALEGGHDLT----AICDASEACV--NALLG
     880       890       900       910           920         930   

        330       340       350       360       370            380 
pF1KE2 NELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML--PHA---PGVQ
       :::      : .. :. :: :: ::.   . . . .:... ....::.  :..    :.:
CCDS83 NEL------EPLAEDI-LHQSP-NMNAVISLQKIIEIQSKYWKSVRMVAVPRGCALAGAQ
                 940         950       960       970       980     

             390       400       410       420       430       440 
pF1KE2 MQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKG
       .:   : .    :   : :.:                                       
CCDS83 LQEETETVSALASLTVDVEQPFAQEDSRTAGEPMEEEPAL                    
         990      1000      1010      1020                         

>>CCDS47554.1 HDAC9 gene_id:9734|Hs108|chr7               (1066 aa)
 initn: 227 init1: 101 opt: 368  Z-score: 346.7  bits: 74.7 E(32554): 5.4e-13
Smith-Waterman score: 421; 27.5% identity (56.4% similar) in 411 aa overlap (29-402:654-1047)

                 10        20        30        40        50        
pF1KE2   MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPH
                                     :: .  ::.   . : . ::  : :  . .
CCDS47 DRPLQPGSATGIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGR
           630       640       650       660       670       680   

       60        70        80        90             100         110
pF1KE2 KATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQM------QRFNVGEDCPVF--DGLFEF
       ::. ::.   :: :. ..: .  : . .. . ..      :.:  .  :  .  :.   .
CCDS47 KASLEEIQLVHS-EHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIW
           690        700       710       720       730       740  

                        120       130       140       150       160
pF1KE2 CQLSTGGS----------VAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLA
        .: ..:.          .:. :  .. .. .::    : :::..: : :::. :.....
CCDS47 NELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPG-HHAEESTAMGFCFFNSVAIT
            750       760       770       780        790       800 

                 170       180       190       200         210     
pF1KE2 ILELLKYH---QRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPGTGDLRDI
         . :. .   ...: .:.:.:::.:...:::.   .. .:.:.:  :..:::.:   ..
CCDS47 A-KYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGSGAPNEV
              810       820       830       840       850       860

         220       230           240       250       260       270 
pF1KE2 GAGKGKYYAVNFPMRDGID----DESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDR
       :.: :. : .:.    :.:    :  : . :. :.. : . ..:. :... : :.: :  
CCDS47 GTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFDALEGHT
              870       880       890       900       910       920

               280          290       300       310       320      
pF1KE2 --LGCFNLTVK--GH-AKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP
         :: ...:.:  :: .: . ..    . : . ::   :    : : . :. :  .  . 
CCDS47 PPLGGYKVTAKCFGHLTKQLMTLADGRVVLALEGGHDLT----AICDASEACV--NALLG
              930       940       950           960         970    

        330       340       350       360       370            380 
pF1KE2 NELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML--PHA---PGVQ
       :::      : .. :. :: :: ::.   . . . .:... ....::.  :..    :.:
CCDS47 NEL------EPLAEDI-LHQSP-NMNAVISLQKIIEIQSKYWKSVRMVAVPRGCALAGAQ
                980         990      1000      1010      1020      

             390       400       410       420       430       440 
pF1KE2 MQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKG
       .:   : .    :   : :.:                                       
CCDS47 LQEETETVSALASLTVDVEQPFAQEDSRTAGEPMEEEPAL                    
       1030      1040      1050      1060                          

>>CCDS47553.1 HDAC9 gene_id:9734|Hs108|chr7               (1069 aa)
 initn: 227 init1: 101 opt: 368  Z-score: 346.7  bits: 74.7 E(32554): 5.4e-13
Smith-Waterman score: 421; 27.5% identity (56.4% similar) in 411 aa overlap (29-402:657-1050)

                 10        20        30        40        50        
pF1KE2   MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPH
                                     :: .  ::.   . : . ::  : :  . .
CCDS47 DRPLQPGSATGIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGR
        630       640       650       660       670       680      

       60        70        80        90             100         110
pF1KE2 KATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQM------QRFNVGEDCPVF--DGLFEF
       ::. ::.   :: :. ..: .  : . .. . ..      :.:  .  :  .  :.   .
CCDS47 KASLEEIQLVHS-EHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIW
        690        700       710       720       730       740     

                        120       130       140       150       160
pF1KE2 CQLSTGGS----------VAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLA
        .: ..:.          .:. :  .. .. .::    : :::..: : :::. :.....
CCDS47 NELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPG-HHAEESTAMGFCFFNSVAIT
         750       760       770       780        790       800    

                 170       180       190       200         210     
pF1KE2 ILELLKYH---QRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPGTGDLRDI
         . :. .   ...: .:.:.:::.:...:::.   .. .:.:.:  :..:::.:   ..
CCDS47 A-KYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGSGAPNEV
           810       820       830       840       850       860   

         220       230           240       250       260       270 
pF1KE2 GAGKGKYYAVNFPMRDGID----DESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDR
       :.: :. : .:.    :.:    :  : . :. :.. : . ..:. :... : :.: :  
CCDS47 GTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFDALEGHT
           870       880       890       900       910       920   

               280          290       300       310       320      
pF1KE2 --LGCFNLTVK--GH-AKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP
         :: ...:.:  :: .: . ..    . : . ::   :    : : . :. :  .  . 
CCDS47 PPLGGYKVTAKCFGHLTKQLMTLADGRVVLALEGGHDLT----AICDASEACV--NALLG
           930       940       950       960           970         

        330       340       350       360       370            380 
pF1KE2 NELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML--PHA---PGVQ
       :::      : .. :. :: :: ::.   . . . .:... ....::.  :..    :.:
CCDS47 NEL------EPLAEDI-LHQSP-NMNAVISLQKIIEIQSKYWKSVRMVAVPRGCALAGAQ
       980              990       1000      1010      1020         

             390       400       410       420       430       440 
pF1KE2 MQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKG
       .:   : .    :   : :.:                                       
CCDS47 LQEETETVSALASLTVDVEQPFAQEDSRTAGEPMEEEPAL                    
    1030      1040      1050      1060                             




488 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:31:00 2016 done: Sun Nov  6 09:31:01 2016
 Total Scan time:  2.920 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com