Result of FASTA (omim) for pFN21AB9838
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9838, 352 aa
  1>>>pF1KB9838 352 - 352 aa - 352 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5116+/-0.000363; mu= 0.3681+/- 0.023
 mean_var=329.2879+/-66.431, 0's: 0 Z-trim(124.4): 33  B-trim: 92 in 1/58
 Lambda= 0.070678
 statistics sampled from 45873 (45909) to 45873 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.538), width:  16
 Scan time:  9.000

The best scores are:                                      opt bits E(85289)
NP_963883 (OMIM: 610303) transcription factor MafA ( 353) 2473 265.1 1.7e-70
NP_001026974 (OMIM: 177075,601088,610202) transcri ( 373)  616 75.8 1.8e-13
XP_016878722 (OMIM: 177075,601088,610202) PREDICTE ( 383)  616 75.8 1.8e-13
XP_016878723 (OMIM: 177075,601088,610202) PREDICTE ( 383)  616 75.8 1.8e-13
XP_016878724 (OMIM: 177075,601088,610202) PREDICTE ( 383)  616 75.8 1.8e-13
NP_005351 (OMIM: 177075,601088,610202) transcripti ( 403)  616 75.8 1.8e-13
NP_005452 (OMIM: 166300,608968,617041) transcripti ( 323)  576 71.6 2.7e-12
XP_011535104 (OMIM: 162080,613750) PREDICTED: neur ( 237)  456 59.2 1.1e-08
XP_011535106 (OMIM: 162080,613750) PREDICTED: neur ( 237)  456 59.2 1.1e-08
NP_006168 (OMIM: 162080,613750) neural retina-spec ( 237)  456 59.2 1.1e-08
XP_005267766 (OMIM: 162080,613750) PREDICTED: neur ( 237)  456 59.2 1.1e-08
XP_005267765 (OMIM: 162080,613750) PREDICTED: neur ( 237)  456 59.2 1.1e-08
XP_005267767 (OMIM: 162080,613750) PREDICTED: neur ( 237)  456 59.2 1.1e-08
XP_011535107 (OMIM: 162080,613750) PREDICTED: neur ( 237)  456 59.2 1.1e-08
XP_011535103 (OMIM: 162080,613750) PREDICTED: neur ( 339)  456 59.4 1.3e-08
XP_016876839 (OMIM: 162080,613750) PREDICTED: neur ( 132)  426 55.9 5.9e-08
XP_011535108 (OMIM: 162080,613750) PREDICTED: neur ( 234)  426 56.2 8.7e-08
XP_006715836 (OMIM: 600197) PREDICTED: transcripti ( 156)  346 47.8 1.9e-05
NP_002351 (OMIM: 600197) transcription factor MafK ( 156)  346 47.8 1.9e-05
XP_005249908 (OMIM: 600197) PREDICTED: transcripti ( 156)  346 47.8 1.9e-05
NP_002350 (OMIM: 602020) transcription factor MafG ( 162)  344 47.6 2.2e-05
XP_011521880 (OMIM: 602020) PREDICTED: transcripti ( 162)  344 47.6 2.2e-05
NP_116100 (OMIM: 602020) transcription factor MafG ( 162)  344 47.6 2.2e-05
NP_001155044 (OMIM: 604877) transcription factor M ( 164)  310 44.2 0.00025
NP_036455 (OMIM: 604877) transcription factor MafF ( 164)  310 44.2 0.00025
NP_001155045 (OMIM: 604877) transcription factor M ( 164)  310 44.2 0.00025
NP_001155046 (OMIM: 604877) transcription factor M ( 135)  290 42.0  0.0009
NP_004566 (OMIM: 113725) POU domain, class 4, tran ( 409)  271 40.6  0.0072


>>NP_963883 (OMIM: 610303) transcription factor MafA [Ho  (353 aa)
 initn: 1873 init1: 1533 opt: 2473  Z-score: 1386.7  bits: 265.1 E(85289): 1.7e-70
Smith-Waterman score: 2473; 99.7% identity (99.7% similar) in 353 aa overlap (1-352:1-353)

               10        20        30        40        50        60
pF1KB9 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEPPEAERFCHRLPPGSLSSTPLSTPCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEPPEAERFCHRLPPGSLSSTPLSTPCS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALEDLYWMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 SVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALEDLYWMS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 GYQHHLNPEALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGGGADDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 GYQHHLNPEALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGGGADDM
              130       140       150       160       170       180

              190       200        210       220       230         
pF1KB9 GAGHHHGAHHAAHHHHAAHHHHHHHHH-GGAGHGGGAGHHVRLEERFSDDQLVSMSVREL
       ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
NP_963 GAGHHHGAHHAAHHHHAAHHHHHHHHHHGGAGHGGGAGHHVRLEERFSDDQLVSMSVREL
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB9 NRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 NRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLEV
              250       260       270       280       290       300

     300       310       320       330       340       350  
pF1KB9 GRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 GRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
              310       320       330       340       350   

>>NP_001026974 (OMIM: 177075,601088,610202) transcriptio  (373 aa)
 initn: 767 init1: 547 opt: 616  Z-score: 363.1  bits: 75.8 E(85289): 1.8e-13
Smith-Waterman score: 1036; 50.0% identity (63.6% similar) in 396 aa overlap (4-334:4-369)

                10        20        30        40            50     
pF1KB9 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
          ::::. ..::.::::.::::::::::::::::: :..:.   : ::   :::::::.
NP_001 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
       :::::::: :::: :::::.          :: :                    :  :::
NP_001 STPCSSVPPSPSFSAPSPGS----------GSEQ--------------------KAHLED
               70        80                                      90

         120       130       140         150       160       170   
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
        :::.:: ..::::::...:::::::::...:.  :.  :  . :   :  :  : : . 
NP_001 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
              100       110       120       130       140       150

           180                     190       200                   
pF1KB9 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHHHH--------------
       ::....::            :. . ::  :.  :::::: ::::                
NP_001 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
              160       170       180       190       200       210

                     210                         220       230     
pF1KB9 ------------HHGGAGHGGGAG--------------HH----VRLEERFSDDQLVSMS
                     ::.: :::.:              ::    .....::::.:::.::
NP_001 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
              220       230       240       250       260       270

         240       250       260       270       280       290     
pF1KB9 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
       :::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
NP_001 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
              280       290       300       310       320       330

         300       310       320       330       340       350  
pF1KB9 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
       : :..::..::: ::::::::.. :   .....  :  :                  
NP_001 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFM              
              340       350       360       370                 

>>XP_016878722 (OMIM: 177075,601088,610202) PREDICTED: t  (383 aa)
 initn: 767 init1: 547 opt: 616  Z-score: 362.9  bits: 75.8 E(85289): 1.8e-13
Smith-Waterman score: 1036; 50.0% identity (63.6% similar) in 396 aa overlap (4-334:4-369)

                10        20        30        40            50     
pF1KB9 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
          ::::. ..::.::::.::::::::::::::::: :..:.   : ::   :::::::.
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
       :::::::: :::: :::::.          :: :                    :  :::
XP_016 STPCSSVPPSPSFSAPSPGS----------GSEQ--------------------KAHLED
               70        80                                      90

         120       130       140         150       160       170   
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
        :::.:: ..::::::...:::::::::...:.  :.  :  . :   :  :  : : . 
XP_016 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
              100       110       120       130       140       150

           180                     190       200                   
pF1KB9 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHHHH--------------
       ::....::            :. . ::  :.  :::::: ::::                
XP_016 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
              160       170       180       190       200       210

                     210                         220       230     
pF1KB9 ------------HHGGAGHGGGAG--------------HH----VRLEERFSDDQLVSMS
                     ::.: :::.:              ::    .....::::.:::.::
XP_016 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
              220       230       240       250       260       270

         240       250       260       270       280       290     
pF1KB9 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
       :::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
XP_016 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
              280       290       300       310       320       330

         300       310       320       330       340       350  
pF1KB9 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
       : :..::..::: ::::::::.. :   .....  :  :                  
XP_016 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFMYPRESSTSVM    
              340       350       360       370       380       

>>XP_016878723 (OMIM: 177075,601088,610202) PREDICTED: t  (383 aa)
 initn: 767 init1: 547 opt: 616  Z-score: 362.9  bits: 75.8 E(85289): 1.8e-13
Smith-Waterman score: 1036; 50.0% identity (63.6% similar) in 396 aa overlap (4-334:4-369)

                10        20        30        40            50     
pF1KB9 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
          ::::. ..::.::::.::::::::::::::::: :..:.   : ::   :::::::.
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
       :::::::: :::: :::::.          :: :                    :  :::
XP_016 STPCSSVPPSPSFSAPSPGS----------GSEQ--------------------KAHLED
               70        80                                      90

         120       130       140         150       160       170   
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
        :::.:: ..::::::...:::::::::...:.  :.  :  . :   :  :  : : . 
XP_016 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
              100       110       120       130       140       150

           180                     190       200                   
pF1KB9 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHHHH--------------
       ::....::            :. . ::  :.  :::::: ::::                
XP_016 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
              160       170       180       190       200       210

                     210                         220       230     
pF1KB9 ------------HHGGAGHGGGAG--------------HH----VRLEERFSDDQLVSMS
                     ::.: :::.:              ::    .....::::.:::.::
XP_016 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
              220       230       240       250       260       270

         240       250       260       270       280       290     
pF1KB9 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
       :::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
XP_016 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
              280       290       300       310       320       330

         300       310       320       330       340       350  
pF1KB9 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
       : :..::..::: ::::::::.. :   .....  :  :                  
XP_016 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFMYPRESSTSVM    
              340       350       360       370       380       

>>XP_016878724 (OMIM: 177075,601088,610202) PREDICTED: t  (383 aa)
 initn: 767 init1: 547 opt: 616  Z-score: 362.9  bits: 75.8 E(85289): 1.8e-13
Smith-Waterman score: 1036; 50.0% identity (63.6% similar) in 396 aa overlap (4-334:4-369)

                10        20        30        40            50     
pF1KB9 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
          ::::. ..::.::::.::::::::::::::::: :..:.   : ::   :::::::.
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
       :::::::: :::: :::::.          :: :                    :  :::
XP_016 STPCSSVPPSPSFSAPSPGS----------GSEQ--------------------KAHLED
               70        80                                      90

         120       130       140         150       160       170   
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
        :::.:: ..::::::...:::::::::...:.  :.  :  . :   :  :  : : . 
XP_016 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
              100       110       120       130       140       150

           180                     190       200                   
pF1KB9 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHHHH--------------
       ::....::            :. . ::  :.  :::::: ::::                
XP_016 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
              160       170       180       190       200       210

                     210                         220       230     
pF1KB9 ------------HHGGAGHGGGAG--------------HH----VRLEERFSDDQLVSMS
                     ::.: :::.:              ::    .....::::.:::.::
XP_016 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
              220       230       240       250       260       270

         240       250       260       270       280       290     
pF1KB9 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
       :::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
XP_016 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
              280       290       300       310       320       330

         300       310       320       330       340       350  
pF1KB9 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
       : :..::..::: ::::::::.. :   .....  :  :                  
XP_016 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFMYPRESSTSVM    
              340       350       360       370       380       

>>NP_005351 (OMIM: 177075,601088,610202) transcription f  (403 aa)
 initn: 767 init1: 547 opt: 616  Z-score: 362.6  bits: 75.8 E(85289): 1.8e-13
Smith-Waterman score: 1036; 50.0% identity (63.6% similar) in 396 aa overlap (4-334:4-369)

                10        20        30        40            50     
pF1KB9 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
          ::::. ..::.::::.::::::::::::::::: :..:.   : ::   :::::::.
NP_005 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
       :::::::: :::: :::::.          :: :                    :  :::
NP_005 STPCSSVPPSPSFSAPSPGS----------GSEQ--------------------KAHLED
               70        80                                      90

         120       130       140         150       160       170   
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
        :::.:: ..::::::...:::::::::...:.  :.  :  . :   :  :  : : . 
NP_005 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
              100       110       120       130       140       150

           180                     190       200                   
pF1KB9 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHHHH--------------
       ::....::            :. . ::  :.  :::::: ::::                
NP_005 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
              160       170       180       190       200       210

                     210                         220       230     
pF1KB9 ------------HHGGAGHGGGAG--------------HH----VRLEERFSDDQLVSMS
                     ::.: :::.:              ::    .....::::.:::.::
NP_005 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
              220       230       240       250       260       270

         240       250       260       270       280       290     
pF1KB9 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
       :::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
NP_005 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
              280       290       300       310       320       330

         300       310       320       330       340       350     
pF1KB9 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL   
       : :..::..::: ::::::::.. :   .....  :  :                     
NP_005 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFITEPTRKLEPSVGYATFW
              340       350       360       370       380       390

NP_005 KPQHRVLTSVFTK
              400   

>>NP_005452 (OMIM: 166300,608968,617041) transcription f  (323 aa)
 initn: 931 init1: 510 opt: 576  Z-score: 341.8  bits: 71.6 E(85289): 2.7e-12
Smith-Waterman score: 991; 51.7% identity (61.8% similar) in 377 aa overlap (1-334:1-319)

               10        20        30         40            50     
pF1KB9 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEP-PEAERF---CHRLPP-GSLSSTPL
       :::::.:: :::.::::.::::::::.::.:::::  .:::    : :: : ::.:::::
NP_005 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTPL
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
       :::::::::::::   ::                                 :  :  :::
NP_005 STPCSSVPSSPSF---SP---------------------------------TEQKTHLED
               70                                            80    

         120       130       140       150       160       170     
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGG
       ::::..  ...:::::::::::::::::::      : . .:  .  ...:::       
NP_005 LYWMASNYQQMNPEALNLTPEDAVEALIGS------HPVPQPLQS--FDSFRG-------
           90       100       110             120                  

         180       190                     200                     
pF1KB9 GADDMGAGHHHGAHHAAHHHHA--------------AHHHHHHHH---------------
              .:::  ::  : :::              :: ::::::               
NP_005 -------AHHHHHHHHPHPHHAYPGAGVAHDELGPHAHPHHHHHHQASPPPSSAASPAQQ
            130       140       150       160       170       180  

            210            220       230       240       250       
pF1KB9 ----HGGAG-HGGG----AGHHVRLEERFSDDQLVSMSVRELNRQLRGFSKEEVIRLKQK
           : : : :. .    :: .  .:.:::::::::::::::::.::::.:.::::::::
NP_005 LPTSHPGPGPHATASATAAGGNGSVEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQK
            190       200       210       220       230       240  

       260       270       280       290       300       310       
pF1KB9 RRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLEVGRLAKERDLYKEKYEKLA
       ::::::::::::::.:::::.: ::.:: :: .:::::: ::.:::.::: :: : ::::
NP_005 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLA
            250       260       270       280       290       300  

       320       330       340       350  
pF1KB9 GRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
       . :   ... .  :  :                  
NP_005 NSGFREAGSTSDSPSSPEFFL              
            310       320                 

>>XP_011535104 (OMIM: 162080,613750) PREDICTED: neural r  (237 aa)
 initn: 686 init1: 430 opt: 456  Z-score: 277.3  bits: 59.2 E(85289): 1.1e-08
Smith-Waterman score: 644; 43.0% identity (60.1% similar) in 316 aa overlap (11-324:3-229)

               10        20        30        40        50        60
pF1KB9 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEPPEAERFCHRLPPGSLSSTPLSTPCS
                 :: ::::.::::::::::::::.:: :..       ::  ...  ::: :
XP_011         MALPPSPLAMEYVNDFDLMKFEVKREPSEGR-------PGPPTASLGSTPYS
                       10        20        30               40     

               70        80        90       100        110         
pF1KB9 SVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSG-KPALEDLYWM
       ::: ::.:  :                              : ::.: : .:.::.:::.
XP_011 SVPPSPTFSEP------------------------------GMVGATEGTRPGLEELYWL
          50                                      60        70     

     120        130       140       150       160       170        
pF1KB9 SGYQHHLNP-EALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGGGAD
       .  :..:.  :::.:.::.:.: : :.:          :. .       ::         
XP_011 ATLQQQLGAGEALGLSPEEAMELLQGQG----------PVPVD------GP---------
          80        90       100                       110         

      180       190       200       210       220       230        
pF1KB9 DMGAGHHHGAHHAAHHHHAAHHHHHHHHHGGAGHGGGAGHHVRLEERFSDDQLVSMSVRE
              ::                  .. :. .  :: .::.: :::::  ::::::::
XP_011 -------HG------------------YYPGSPEETGA-QHVQLAERFSDAALVSMSVRE
                                       120        130       140    

      240       250       260       270       280       290        
pF1KB9 LNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLE
       ::::::: ...:..::::.:::::::::::.:: ::.:::. ::.:. .: .:.. :. :
XP_011 LNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAE
          150       160       170       180       190       200    

      300       310       320       330       340       350  
pF1KB9 VGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
       :.:::.:::::: . ..:.. .::::                            
XP_011 VARLARERDLYKARCDRLTS-SGPGSGDPSHLFL                    
          210       220        230                           

>>XP_011535106 (OMIM: 162080,613750) PREDICTED: neural r  (237 aa)
 initn: 686 init1: 430 opt: 456  Z-score: 277.3  bits: 59.2 E(85289): 1.1e-08
Smith-Waterman score: 644; 43.0% identity (60.1% similar) in 316 aa overlap (11-324:3-229)

               10        20        30        40        50        60
pF1KB9 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEPPEAERFCHRLPPGSLSSTPLSTPCS
                 :: ::::.::::::::::::::.:: :..       ::  ...  ::: :
XP_011         MALPPSPLAMEYVNDFDLMKFEVKREPSEGR-------PGPPTASLGSTPYS
                       10        20        30               40     

               70        80        90       100        110         
pF1KB9 SVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSG-KPALEDLYWM
       ::: ::.:  :                              : ::.: : .:.::.:::.
XP_011 SVPPSPTFSEP------------------------------GMVGATEGTRPGLEELYWL
          50                                      60        70     

     120        130       140       150       160       170        
pF1KB9 SGYQHHLNP-EALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGGGAD
       .  :..:.  :::.:.::.:.: : :.:          :. .       ::         
XP_011 ATLQQQLGAGEALGLSPEEAMELLQGQG----------PVPVD------GP---------
          80        90       100                       110         

      180       190       200       210       220       230        
pF1KB9 DMGAGHHHGAHHAAHHHHAAHHHHHHHHHGGAGHGGGAGHHVRLEERFSDDQLVSMSVRE
              ::                  .. :. .  :: .::.: :::::  ::::::::
XP_011 -------HG------------------YYPGSPEETGA-QHVQLAERFSDAALVSMSVRE
                                       120        130       140    

      240       250       260       270       280       290        
pF1KB9 LNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLE
       ::::::: ...:..::::.:::::::::::.:: ::.:::. ::.:. .: .:.. :. :
XP_011 LNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAE
          150       160       170       180       190       200    

      300       310       320       330       340       350  
pF1KB9 VGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
       :.:::.:::::: . ..:.. .::::                            
XP_011 VARLARERDLYKARCDRLTS-SGPGSGDPSHLFL                    
          210       220        230                           

>>NP_006168 (OMIM: 162080,613750) neural retina-specific  (237 aa)
 initn: 686 init1: 430 opt: 456  Z-score: 277.3  bits: 59.2 E(85289): 1.1e-08
Smith-Waterman score: 644; 43.0% identity (60.1% similar) in 316 aa overlap (11-324:3-229)

               10        20        30        40        50        60
pF1KB9 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEPPEAERFCHRLPPGSLSSTPLSTPCS
                 :: ::::.::::::::::::::.:: :..       ::  ...  ::: :
NP_006         MALPPSPLAMEYVNDFDLMKFEVKREPSEGR-------PGPPTASLGSTPYS
                       10        20        30               40     

               70        80        90       100        110         
pF1KB9 SVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSG-KPALEDLYWM
       ::: ::.:  :                              : ::.: : .:.::.:::.
NP_006 SVPPSPTFSEP------------------------------GMVGATEGTRPGLEELYWL
          50                                      60        70     

     120        130       140       150       160       170        
pF1KB9 SGYQHHLNP-EALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGGGAD
       .  :..:.  :::.:.::.:.: : :.:          :. .       ::         
NP_006 ATLQQQLGAGEALGLSPEEAMELLQGQG----------PVPVD------GP---------
          80        90       100                       110         

      180       190       200       210       220       230        
pF1KB9 DMGAGHHHGAHHAAHHHHAAHHHHHHHHHGGAGHGGGAGHHVRLEERFSDDQLVSMSVRE
              ::                  .. :. .  :: .::.: :::::  ::::::::
NP_006 -------HG------------------YYPGSPEETGA-QHVQLAERFSDAALVSMSVRE
                                       120        130       140    

      240       250       260       270       280       290        
pF1KB9 LNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLE
       ::::::: ...:..::::.:::::::::::.:: ::.:::. ::.:. .: .:.. :. :
NP_006 LNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAE
          150       160       170       180       190       200    

      300       310       320       330       340       350  
pF1KB9 VGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
       :.:::.:::::: . ..:.. .::::                            
NP_006 VARLARERDLYKARCDRLTS-SGPGSGDPSHLFL                    
          210       220        230                           




352 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:31:40 2016 done: Sun Nov  6 09:31:42 2016
 Total Scan time:  9.000 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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