Result of FASTA (omim) for pFN21AE1949
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1949, 504 aa
  1>>>pF1KE1949 504 - 504 aa - 504 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2473+/-0.000367; mu= 9.5200+/- 0.023
 mean_var=126.2586+/-25.767, 0's: 0 Z-trim(117.0): 15  B-trim: 33 in 1/55
 Lambda= 0.114142
 statistics sampled from 28553 (28568) to 28553 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.335), width:  16
 Scan time:  9.230

The best scores are:                                      opt bits E(85289)
NP_006107 (OMIM: 602615) TGF-beta-activated kinase ( 504) 3292 553.5 5.3e-157
NP_705717 (OMIM: 602615) TGF-beta-activated kinase ( 462) 2828 477.0 4.9e-134


>>NP_006107 (OMIM: 602615) TGF-beta-activated kinase 1 a  (504 aa)
 initn: 3292 init1: 3292 opt: 3292  Z-score: 2939.7  bits: 553.5 E(85289): 5.3e-157
Smith-Waterman score: 3292; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)

               10        20        30        40        50        60
pF1KE1 MAAQRRSLLQSEQQPSWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAAQRRSLLQSEQQPSWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQEST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQEST
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 GPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LVRNFGYPLGEMSQPTPSPAPAAGGRVYPVSVPYSSAQSTSKTSVTLSLVMPSQGQMVNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LVRNFGYPLGEMSQPTPSPAPAAGGRVYPVSVPYSSAQSTSKTSVTLSLVMPSQGQMVNG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 AHSASTLDEATPTLTNQSPTLTLQSTNTHTQSSSSSSDGGLFRSRPAHSLPPGEDGRVEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AHSASTLDEATPTLTNQSPTLTLQSTNTHTQSSSSSSDGGLFRSRPAHSLPPGEDGRVEP
              430       440       450       460       470       480

              490       500    
pF1KE1 YVDFAEFYRLWSVDHGEQSVVTAP
       ::::::::::::::::::::::::
NP_006 YVDFAEFYRLWSVDHGEQSVVTAP
              490       500    

>>NP_705717 (OMIM: 602615) TGF-beta-activated kinase 1 a  (462 aa)
 initn: 2826 init1: 2826 opt: 2828  Z-score: 2527.3  bits: 477.0 E(85289): 4.9e-134
Smith-Waterman score: 2828; 99.1% identity (99.8% similar) in 440 aa overlap (1-440:1-439)

               10        20        30        40        50        60
pF1KE1 MAAQRRSLLQSEQQPSWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MAAQRRSLLQSEQQPSWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 NCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 IDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQEST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 ANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQEST
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 RRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 GPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 GPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LVRNFGYPLGEMSQPTPSPAPAAGGRVYPVSVPYSSAQSTSKTSVTLSLVMPSQGQMVNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 LVRNFGYPLGEMSQPTPSPAPAAGGRVYPVSVPYSSAQSTSKTSVTLSLVMPSQGQMVNG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 AHSASTLDEATPTLTNQSPTLTLQSTNTHTQSSSSSSDGGLFRSRPAHSLPPGEDGRVEP
       ::::::::::::::: ..:.                                        
NP_705 AHSASTLDEATPTLT-KDPSRPASDLTAIPQCQLNLLGSLTPG                 
              430        440       450       460                   




504 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:45:33 2016 done: Sun Nov  6 09:45:34 2016
 Total Scan time:  9.230 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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