Result of FASTA (omim) for pFN21AE3085
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3085, 250 aa
  1>>>pF1KE3085 250 - 250 aa - 250 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7090+/-0.000288; mu= 13.4367+/- 0.018
 mean_var=84.4607+/-16.344, 0's: 0 Z-trim(119.4): 13  B-trim: 0 in 0/53
 Lambda= 0.139555
 statistics sampled from 33272 (33289) to 33272 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.39), width:  16
 Scan time:  7.050

The best scores are:                                      opt bits E(85289)
NP_003799 (OMIM: 604472) tumor necrosis factor lig ( 250) 1684 348.1 8.6e-96
NP_742085 (OMIM: 604472) tumor necrosis factor lig ( 247) 1661 343.5 2.1e-94
NP_001185553 (OMIM: 604472) tumor necrosis factor  ( 205)  928 195.9 4.8e-50
NP_001185552 (OMIM: 604472) tumor necrosis factor  ( 222)  928 195.9 5.1e-50
NP_001185551 (OMIM: 604472) tumor necrosis factor  ( 223)  926 195.5 6.8e-50
NP_742084 (OMIM: 604472) tumor necrosis factor lig ( 234)  832 176.6 3.5e-44
NP_006564 (OMIM: 603969) tumor necrosis factor lig ( 285)  312 71.9 1.4e-12
NP_001139117 (OMIM: 603969) tumor necrosis factor  ( 266)  285 66.5 5.6e-11
XP_006724693 (OMIM: 300451,305100,313500) PREDICTE ( 388)  163 42.0  0.0019
NP_001390 (OMIM: 300451,305100,313500) ectodysplas ( 391)  163 42.0  0.0019
NP_001005612 (OMIM: 300451,305100,313500) ectodysp ( 386)  161 41.6  0.0024
NP_001005609 (OMIM: 300451,305100,313500) ectodysp ( 389)  161 41.6  0.0025


>>NP_003799 (OMIM: 604472) tumor necrosis factor ligand   (250 aa)
 initn: 1684 init1: 1684 opt: 1684  Z-score: 1840.8  bits: 348.1 E(85289): 8.6e-96
Smith-Waterman score: 1684; 99.6% identity (100.0% similar) in 250 aa overlap (1-250:1-250)

               10        20        30        40        50        60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
       :::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
NP_003 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
              190       200       210       220       230       240

              250
pF1KE3 HGTFLGFVKL
       ::::::::::
NP_003 HGTFLGFVKL
              250

>>NP_742085 (OMIM: 604472) tumor necrosis factor ligand   (247 aa)
 initn: 1678 init1: 1661 opt: 1661  Z-score: 1815.8  bits: 343.5 E(85289): 2.1e-94
Smith-Waterman score: 1661; 99.2% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
       :::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
NP_742 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
              190       200       210       220       230       240

              250
pF1KE3 HGTFLGFVKL
       ::::::.   
NP_742 HGTFLGL   
                 

>>NP_001185553 (OMIM: 604472) tumor necrosis factor liga  (205 aa)
 initn: 928 init1: 928 opt: 928  Z-score: 1019.4  bits: 195.9 E(85289): 4.8e-50
Smith-Waterman score: 1321; 88.0% identity (88.0% similar) in 233 aa overlap (18-250:1-205)

               10        20        30        40        50        60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
                        :::::::::::::::::::::::::::::::::::::::::::
NP_001                  MGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
                                10        20        30        40   

               70        80        90       100       110       120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
       ::::::::::::::::::::::::::                            ::::::
NP_001 EVSRLQGTGGPSQNGEGYPWQSLPEQ----------------------------HSVLHL
            50        60                                    70     

              130       140       150       160       170       180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
          80        90       100       110       120       130     

              190       200       210       220       230       240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
         140       150       160       170       180       190     

              250
pF1KE3 HGTFLGFVKL
       ::::::::::
NP_001 HGTFLGFVKL
         200     

>>NP_001185552 (OMIM: 604472) tumor necrosis factor liga  (222 aa)
 initn: 928 init1: 928 opt: 928  Z-score: 1018.9  bits: 195.9 E(85289): 5.1e-50
Smith-Waterman score: 1445; 88.8% identity (88.8% similar) in 250 aa overlap (1-250:1-222)

               10        20        30        40        50        60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
       ::::::::::::::::::::::::::                            ::::::
NP_001 EVSRLQGTGGPSQNGEGYPWQSLPEQ----------------------------HSVLHL
               70        80                                    90  

              130       140       150       160       170       180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
            100       110       120       130       140       150  

              190       200       210       220       230       240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
            160       170       180       190       200       210  

              250
pF1KE3 HGTFLGFVKL
       ::::::::::
NP_001 HGTFLGFVKL
            220  

>>NP_001185551 (OMIM: 604472) tumor necrosis factor liga  (223 aa)
 initn: 926 init1: 926 opt: 926  Z-score: 1016.7  bits: 195.5 E(85289): 6.8e-50
Smith-Waterman score: 1454; 89.2% identity (89.2% similar) in 250 aa overlap (1-250:1-223)

               10        20        30        40        50        60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
       ::::::::::::::::::::::::::                           :::::::
NP_001 EVSRLQGTGGPSQNGEGYPWQSLPEQ---------------------------QHSVLHL
               70        80                                   90   

              130       140       150       160       170       180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
           100       110       120       130       140       150   

              190       200       210       220       230       240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
           160       170       180       190       200       210   

              250
pF1KE3 HGTFLGFVKL
       ::::::::::
NP_001 HGTFLGFVKL
           220   

>>NP_742084 (OMIM: 604472) tumor necrosis factor ligand   (234 aa)
 initn: 828 init1: 828 opt: 832  Z-score: 914.1  bits: 176.6 E(85289): 3.5e-44
Smith-Waterman score: 1535; 92.8% identity (93.6% similar) in 250 aa overlap (1-250:1-234)

               10        20        30        40        50        60
pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL
       :::::::::::::::::::::::::::::::::::.::::::::::::::::        
NP_742 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQK--------
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
               .:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 --------NDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
                    120       130       140       150       160    

              190       200       210       220       230       240
pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_742 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
          170       180       190       200       210       220    

              250
pF1KE3 HGTFLGFVKL
       ::::::::::
NP_742 HGTFLGFVKL
          230    

>>NP_006564 (OMIM: 603969) tumor necrosis factor ligand   (285 aa)
 initn: 302 init1: 135 opt: 312  Z-score: 347.1  bits: 71.9 E(85289): 1.4e-12
Smith-Waterman score: 324; 31.8% identity (62.2% similar) in 217 aa overlap (52-250:73-284)

              30        40        50        60        70        80 
pF1KE3 VREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQ
                                     : .: ::: :..  ..   :.  : : :  
NP_006 KDGKLLAATLLLALLSCCLTVVSFYQVAALQGDLASLRAELQGHHAEKLPA--GAGAPKA
             50        60        70        80        90         100

                90               100       110       120        130
pF1KE3 SLPEQS--SDALEAWE--------SGERSRKRRAVLTQKQKKQHSVLHLVPINAT-SKDD
       .: :    . .:. .:        :.. ::..:::   ..   .. :.:.  . : . . 
NP_006 GLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQK
              110       120       130       140       150       160

              140       150       160       170       180          
pF1KE3 SDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE-----
       .. : : :  ...:: .:. .   . ....: ...:.:::. : :..::....:.     
NP_006 GSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVF
              170       180       190       200       210       220

          190       200        210       220       230       240   
pF1KE3 -GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGT
         .    ::::::..:: . :.   :::::::. .:..:: :.. :::  :...:.   :
NP_006 GDELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVT
              230       240          250       260       270       

           250 
pF1KE3 FLGFVKL 
       :.: .:: 
NP_006 FFGALKLL
       280     

>>NP_001139117 (OMIM: 603969) tumor necrosis factor liga  (266 aa)
 initn: 319 init1: 135 opt: 285  Z-score: 318.1  bits: 66.5 E(85289): 5.6e-11
Smith-Waterman score: 286; 30.6% identity (58.8% similar) in 216 aa overlap (52-250:73-265)

              30        40        50        60        70        80 
pF1KE3 VREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQ
                                     : .: ::: :..  ..   :.  : : :  
NP_001 KDGKLLAATLLLALLSCCLTVVSFYQVAALQGDLASLRAELQGHHAEKLPA--GAGAPKA
             50        60        70        80        90         100

                90               100       110       120       130 
pF1KE3 SLPEQS--SDALEAWE--------SGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDS
       .: :    . .:. .:        :.. ::..:::   ..  ...   .::         
NP_001 GLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETGSYT---FVP---------
              110       120       130       140                    

             140       150       160       170       180           
pF1KE3 DVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE------
             :  ...:: .:. .   . ....: ...:.:::. : :..::....:.      
NP_001 ------WLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFG
            150       160       170       180       190       200  

         190       200        210       220       230       240    
pF1KE3 GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTF
        .    ::::::..:: . :.   :::::::. .:..:: :.. :::  :...:.   ::
NP_001 DELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTF
            210       220          230       240       250         

          250 
pF1KE3 LGFVKL 
       .: .:: 
NP_001 FGALKLL
     260      

>>XP_006724693 (OMIM: 300451,305100,313500) PREDICTED: e  (388 aa)
 initn: 218 init1: 112 opt: 163  Z-score: 183.0  bits: 42.0 E(85289): 0.0019
Smith-Waterman score: 172; 25.8% identity (54.9% similar) in 182 aa overlap (69-250:215-382)

       40        50        60        70        80        90        
pF1KE3 LGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGE
                                     : :.  :   : :. :  .. .  : ..: 
XP_006 NGPPGPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGPPGP-QGPPGLQGPSGAADKAGT
          190       200       210       220        230       240   

      100       110       120       130       140       150        
pF1KE3 RSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQ
       :  .  .:  : : .  .: .   .:       : ...  .: . .   :. ..  ... 
XP_006 RENQPAVVHLQGQGSAIQVKNGGVLN-------DWSRITMNPKVFK---LHPRSGELEVL
           250       260              270       280          290   

      160       170       180       190       200       210        
pF1KE3 DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFH
         :.:..::::    ..::  . .: :    .. ...: ::. .     ::.::.:::  
XP_006 VDGTYFIYSQVEVYYINFT--DFASYEVVVDEKPFLQCTRSIETGKTN-YNTCYTAGVCL
           300       310         320       330        340       350

      220       230       240       250      
pF1KE3 LHQGDILSVIIPRARAKLNLSPHGTFLGFVKL      
       :.  . ..: . .:  ..:.: : ::.: ..:      
XP_006 LKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPAS
              360       370       380        

>>NP_001390 (OMIM: 300451,305100,313500) ectodysplasin-A  (391 aa)
 initn: 218 init1: 112 opt: 163  Z-score: 183.0  bits: 42.0 E(85289): 0.0019
Smith-Waterman score: 174; 25.8% identity (56.6% similar) in 182 aa overlap (69-250:215-385)

       40        50        60        70        80        90        
pF1KE3 LGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGE
                                     : :.  :   : :. :  .. .  : ..: 
NP_001 NGPPGPPGPPGPQGPPGIPGIPGIPGTTVMGPPGPPGPPGP-QGPPGLQGPSGAADKAGT
          190       200       210       220        230       240   

      100       110       120       130       140       150        
pF1KE3 RSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQ
       :  .  .:  :    : :... :  . ..   .: ...  .: . .   :. ..  ... 
NP_001 RENQPAVVHLQG---QGSAIQ-VKNDLSGGVLNDWSRITMNPKVFK---LHPRSGELEVL
           250          260        270       280          290      

      160       170       180       190       200       210        
pF1KE3 DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFH
         :.:..::::    ..::  . .: :    .. ...: ::. .     ::.::.:::  
NP_001 VDGTYFIYSQVEVYYINFT--DFASYEVVVDEKPFLQCTRSIETGKTN-YNTCYTAGVCL
        300       310         320       330       340        350   

      220       230       240       250      
pF1KE3 LHQGDILSVIIPRARAKLNLSPHGTFLGFVKL      
       :.  . ..: . .:  ..:.: : ::.: ..:      
NP_001 LKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPAS
           360       370       380       390 




250 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:15:39 2016 done: Sun Nov  6 05:15:40 2016
 Total Scan time:  7.050 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com