FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3085, 250 aa 1>>>pF1KE3085 250 - 250 aa - 250 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5687+/-0.00068; mu= 14.5107+/- 0.041 mean_var=82.5741+/-16.146, 0's: 0 Z-trim(112.0): 19 B-trim: 0 in 0/52 Lambda= 0.141141 statistics sampled from 12835 (12847) to 12835 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.395), width: 16 Scan time: 2.520 The best scores are: opt bits E(32554) CCDS11111.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 250) 1684 351.8 2.6e-97 CCDS42256.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 247) 1661 347.1 6.5e-96 CCDS11108.1 TNFSF13 gene_id:407977|Hs108|chr17 ( 330) 1096 232.1 3.5e-61 CCDS56019.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 205) 928 197.8 4.8e-51 CCDS56018.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 222) 928 197.8 5.1e-51 CCDS73957.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 223) 926 197.4 6.8e-51 CCDS11112.1 TNFSF13 gene_id:8741|Hs108|chr17 ( 234) 832 178.3 4.1e-45 CCDS9509.1 TNFSF13B gene_id:10673|Hs108|chr13 ( 285) 312 72.5 3.6e-13 CCDS45067.1 TNFSF13B gene_id:10673|Hs108|chr13 ( 266) 285 66.9 1.5e-11 >>CCDS11111.1 TNFSF13 gene_id:8741|Hs108|chr17 (250 aa) initn: 1684 init1: 1684 opt: 1684 Z-score: 1860.6 bits: 351.8 E(32554): 2.6e-97 Smith-Waterman score: 1684; 99.6% identity (100.0% similar) in 250 aa overlap (1-250:1-250) 10 20 30 40 50 60 pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: CCDS11 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 190 200 210 220 230 240 250 pF1KE3 HGTFLGFVKL :::::::::: CCDS11 HGTFLGFVKL 250 >>CCDS42256.1 TNFSF13 gene_id:8741|Hs108|chr17 (247 aa) initn: 1678 init1: 1661 opt: 1661 Z-score: 1835.4 bits: 347.1 E(32554): 6.5e-96 Smith-Waterman score: 1661; 99.2% identity (100.0% similar) in 247 aa overlap (1-247:1-247) 10 20 30 40 50 60 pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: CCDS42 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 190 200 210 220 230 240 250 pF1KE3 HGTFLGFVKL ::::::. CCDS42 HGTFLGL >>CCDS11108.1 TNFSF13 gene_id:407977|Hs108|chr17 (330 aa) initn: 1096 init1: 1096 opt: 1096 Z-score: 1211.9 bits: 232.1 E(32554): 3.5e-61 Smith-Waterman score: 1096; 99.4% identity (100.0% similar) in 165 aa overlap (86-250:166-330) 60 70 80 90 100 110 pF1KE3 QSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQH ::::::::::.::::::::::::::::::: CCDS11 ARINSSSPLRYNRQIGEFIVTRAGLYYLYCQSSDALEAWENGERSRKRRAVLTQKQKKQH 140 150 160 170 180 190 120 130 140 150 160 170 pF1KE3 SVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVT 200 210 220 230 240 250 180 190 200 210 220 230 pF1KE3 FTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAK 260 270 280 290 300 310 240 250 pF1KE3 LNLSPHGTFLGFVKL ::::::::::::::: CCDS11 LNLSPHGTFLGFVKL 320 330 >>CCDS56019.1 TNFSF13 gene_id:8741|Hs108|chr17 (205 aa) initn: 928 init1: 928 opt: 928 Z-score: 1029.9 bits: 197.8 E(32554): 4.8e-51 Smith-Waterman score: 1321; 88.0% identity (88.0% similar) in 233 aa overlap (18-250:1-205) 10 20 30 40 50 60 pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR ::::::::::::::::::::::::::::::::::::::::::: CCDS56 MGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 10 20 30 40 70 80 90 100 110 120 pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL :::::::::::::::::::::::::: :::::: CCDS56 EVSRLQGTGGPSQNGEGYPWQSLPEQ----------------------------HSVLHL 50 60 70 130 140 150 160 170 180 pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 80 90 100 110 120 130 190 200 210 220 230 240 pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 140 150 160 170 180 190 250 pF1KE3 HGTFLGFVKL :::::::::: CCDS56 HGTFLGFVKL 200 >>CCDS56018.1 TNFSF13 gene_id:8741|Hs108|chr17 (222 aa) initn: 928 init1: 928 opt: 928 Z-score: 1029.4 bits: 197.8 E(32554): 5.1e-51 Smith-Waterman score: 1445; 88.8% identity (88.8% similar) in 250 aa overlap (1-250:1-222) 10 20 30 40 50 60 pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL :::::::::::::::::::::::::: :::::: CCDS56 EVSRLQGTGGPSQNGEGYPWQSLPEQ----------------------------HSVLHL 70 80 90 130 140 150 160 170 180 pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 160 170 180 190 200 210 250 pF1KE3 HGTFLGFVKL :::::::::: CCDS56 HGTFLGFVKL 220 >>CCDS73957.1 TNFSF13 gene_id:8741|Hs108|chr17 (223 aa) initn: 926 init1: 926 opt: 926 Z-score: 1027.2 bits: 197.4 E(32554): 6.8e-51 Smith-Waterman score: 1454; 89.2% identity (89.2% similar) in 250 aa overlap (1-250:1-223) 10 20 30 40 50 60 pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL :::::::::::::::::::::::::: ::::::: CCDS73 EVSRLQGTGGPSQNGEGYPWQSLPEQ---------------------------QHSVLHL 70 80 90 130 140 150 160 170 180 pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 160 170 180 190 200 210 250 pF1KE3 HGTFLGFVKL :::::::::: CCDS73 HGTFLGFVKL 220 >>CCDS11112.1 TNFSF13 gene_id:8741|Hs108|chr17 (234 aa) initn: 828 init1: 828 opt: 832 Z-score: 923.4 bits: 178.3 E(32554): 4.1e-45 Smith-Waterman score: 1535; 92.8% identity (93.6% similar) in 250 aa overlap (1-250:1-234) 10 20 30 40 50 60 pF1KE3 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWESGERSRKRRAVLTQKQKKQHSVLHL :::::::::::::::::::::::::::::::::::.:::::::::::::::: CCDS11 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQK-------- 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ .::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 --------NDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 170 180 190 200 210 220 250 pF1KE3 HGTFLGFVKL :::::::::: CCDS11 HGTFLGFVKL 230 >>CCDS9509.1 TNFSF13B gene_id:10673|Hs108|chr13 (285 aa) initn: 302 init1: 135 opt: 312 Z-score: 350.0 bits: 72.5 E(32554): 3.6e-13 Smith-Waterman score: 324; 31.8% identity (62.2% similar) in 217 aa overlap (52-250:73-284) 30 40 50 60 70 80 pF1KE3 VREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQ : .: ::: :.. .. :. : : : CCDS95 KDGKLLAATLLLALLSCCLTVVSFYQVAALQGDLASLRAELQGHHAEKLPA--GAGAPKA 50 60 70 80 90 100 90 100 110 120 130 pF1KE3 SLPEQS--SDALEAWE--------SGERSRKRRAVLTQKQKKQHSVLHLVPINAT-SKDD .: : . .:. .: :.. ::..::: .. .. :.:. . : . . CCDS95 GLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQK 110 120 130 140 150 160 140 150 160 170 180 pF1KE3 SDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE----- .. : : : ...:: .:. . . ....: ...:.:::. : :..::....:. CCDS95 GSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVF 170 180 190 200 210 220 190 200 210 220 230 240 pF1KE3 -GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGT . ::::::..:: . :. :::::::. .:..:: :.. ::: :...:. : CCDS95 GDELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVT 230 240 250 260 270 250 pF1KE3 FLGFVKL :.: .:: CCDS95 FFGALKLL 280 >>CCDS45067.1 TNFSF13B gene_id:10673|Hs108|chr13 (266 aa) initn: 319 init1: 135 opt: 285 Z-score: 320.7 bits: 66.9 E(32554): 1.5e-11 Smith-Waterman score: 286; 30.6% identity (58.8% similar) in 216 aa overlap (52-250:73-265) 30 40 50 60 70 80 pF1KE3 VREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQ : .: ::: :.. .. :. : : : CCDS45 KDGKLLAATLLLALLSCCLTVVSFYQVAALQGDLASLRAELQGHHAEKLPA--GAGAPKA 50 60 70 80 90 100 90 100 110 120 130 pF1KE3 SLPEQS--SDALEAWE--------SGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDS .: : . .:. .: :.. ::..::: .. ... .:: CCDS45 GLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETGSYT---FVP--------- 110 120 130 140 140 150 160 170 180 pF1KE3 DVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE------ : ...:: .:. . . ....: ...:.:::. : :..::....:. CCDS45 ------WLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFG 150 160 170 180 190 200 190 200 210 220 230 240 pF1KE3 GQGRQETLFRCIRSMP-SHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTF . ::::::..:: . :. :::::::. .:..:: :.. ::: :...:. :: CCDS45 DELSLVTLFRCIQNMPETLPN---NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTF 210 220 230 240 250 250 pF1KE3 LGFVKL .: .:: CCDS45 FGALKLL 260 250 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:15:39 2016 done: Sun Nov 6 05:15:39 2016 Total Scan time: 2.520 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]