FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6252, 221 aa 1>>>pF1KE6252 221 - 221 aa - 221 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.1834+/-0.00028; mu= 2.0490+/- 0.018 mean_var=183.7852+/-36.562, 0's: 0 Z-trim(124.4): 9 B-trim: 0 in 0/53 Lambda= 0.094606 statistics sampled from 45903 (45913) to 45903 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.538), width: 16 Scan time: 5.290 The best scores are: opt bits E(85289) NP_976033 (OMIM: 180104,607331) retinitis pigmento ( 221) 1527 219.4 3.7e-57 XP_011513770 (OMIM: 180104,607331) PREDICTED: reti ( 187) 1184 172.5 4e-43 >>NP_976033 (OMIM: 180104,607331) retinitis pigmentosa 9 (221 aa) initn: 1527 init1: 1527 opt: 1527 Z-score: 1147.1 bits: 219.4 E(85289): 3.7e-57 Smith-Waterman score: 1527; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221) 10 20 30 40 50 60 pF1KE6 MSSRPGREDVGAAGARRPREPPEQELQRRREQKRRRHDAQQLQQLKHLESFYEKPPPGLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 MSSRPGREDVGAAGARRPREPPEQELQRRREQKRRRHDAQQLQQLKHLESFYEKPPPGLI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGKEVKVMQCWRCKRYGHRTGDKEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 KEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGKEVKVMQCWRCKRYGHRTGDKEC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PFFIKGNQKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_976 PFFIKGNQKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSE 130 140 150 160 170 180 190 200 210 220 pF1KE6 GKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSKSNEGSDSE ::::::::::::::::::::::::::::::::::::::::: NP_976 GKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSKSNEGSDSE 190 200 210 220 >>XP_011513770 (OMIM: 180104,607331) PREDICTED: retiniti (187 aa) initn: 1178 init1: 1178 opt: 1184 Z-score: 895.1 bits: 172.5 E(85289): 4e-43 Smith-Waterman score: 1184; 94.6% identity (96.2% similar) in 184 aa overlap (39-221:4-187) 10 20 30 40 50 60 pF1KE6 DVGAAGARRPREPPEQELQRRREQKRRRHDAQQLQQLKHLESF-YEKPPPGLIKEDETKP : : .. :: . :::::::::::::::: XP_011 MAGAAQHREEKHSALLSYEKPPPGLIKEDETKP 10 20 30 70 80 90 100 110 120 pF1KE6 EDCIPDVPGNEHAREFLAHAPTKGLWMPLGKEVKVMQCWRCKRYGHRTGDKECPFFIKGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EDCIPDVPGNEHAREFLAHAPTKGLWMPLGKEVKVMQCWRCKRYGHRTGDKECPFFIKGN 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE6 QKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSEGKEKHKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSEGKEKHKK 100 110 120 130 140 150 190 200 210 220 pF1KE6 KKKKEKHKKRKKEKKKKKKRKHKSSKSNEGSDSE :::::::::::::::::::::::::::::::::: XP_011 KKKKEKHKKRKKEKKKKKKRKHKSSKSNEGSDSE 160 170 180 221 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:28:58 2016 done: Tue Nov 8 11:28:59 2016 Total Scan time: 5.290 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]