FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6252, 221 aa 1>>>pF1KE6252 221 - 221 aa - 221 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6374+/-0.0007; mu= 5.4801+/- 0.042 mean_var=172.8071+/-33.516, 0's: 0 Z-trim(116.7): 23 B-trim: 0 in 0/53 Lambda= 0.097565 statistics sampled from 17329 (17345) to 17329 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.533), width: 16 Scan time: 1.690 The best scores are: opt bits E(32554) CCDS5440.1 RP9 gene_id:6100|Hs108|chr7 ( 221) 1527 225.7 1.8e-59 >>CCDS5440.1 RP9 gene_id:6100|Hs108|chr7 (221 aa) initn: 1527 init1: 1527 opt: 1527 Z-score: 1181.0 bits: 225.7 E(32554): 1.8e-59 Smith-Waterman score: 1527; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221) 10 20 30 40 50 60 pF1KE6 MSSRPGREDVGAAGARRPREPPEQELQRRREQKRRRHDAQQLQQLKHLESFYEKPPPGLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MSSRPGREDVGAAGARRPREPPEQELQRRREQKRRRHDAQQLQQLKHLESFYEKPPPGLI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGKEVKVMQCWRCKRYGHRTGDKEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 KEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGKEVKVMQCWRCKRYGHRTGDKEC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PFFIKGNQKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 PFFIKGNQKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSE 130 140 150 160 170 180 190 200 210 220 pF1KE6 GKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSKSNEGSDSE ::::::::::::::::::::::::::::::::::::::::: CCDS54 GKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSKSNEGSDSE 190 200 210 220 221 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:28:58 2016 done: Tue Nov 8 11:28:58 2016 Total Scan time: 1.690 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]