Result of FASTA (omim) for pFN21AE3033
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3033, 151 aa
  1>>>pF1KE3033 151 - 151 aa - 151 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9387+/-0.000273; mu= 13.5245+/- 0.017
 mean_var=63.4891+/-12.421, 0's: 0 Z-trim(120.1): 119  B-trim: 0 in 0/56
 Lambda= 0.160962
 statistics sampled from 34834 (34957) to 34834 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.41), width:  16
 Scan time:  5.270

The best scores are:                                      opt bits E(85289)
NP_060769 (OMIM: 614277) ubiquitin-conjugating enz ( 180) 1060 253.9 8.5e-68
NP_001001481 (OMIM: 614277) ubiquitin-conjugating  ( 191) 1029 246.7 1.3e-65
NP_001257944 (OMIM: 614277) ubiquitin-conjugating  ( 188) 1028 246.5 1.5e-65
NP_001265483 (OMIM: 604151) ubiquitin-conjugating  ( 207)  313 80.5 1.6e-15
NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207)  313 80.5 1.6e-15
XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207)  313 80.5 1.6e-15
NP_001265484 (OMIM: 604151) ubiquitin-conjugating  ( 207)  313 80.5 1.6e-15
NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207)  313 80.5 1.6e-15
XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189)  307 79.1 3.9e-15
XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201)  307 79.1 4.1e-15
NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201)  307 79.1 4.1e-15
NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193)  305 78.6 5.4e-15
XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167)  301 77.6 9.2e-15
NP_001189405 (OMIM: 602916) ubiquitin-conjugating  ( 160)  298 76.9 1.4e-14
NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147)  296 76.4 1.9e-14
NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152)  275 71.6 5.6e-13
NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149)  267 69.7   2e-12
NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  266 69.5 2.3e-12
NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  266 69.5 2.3e-12
NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  266 69.5 2.3e-12
NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  266 69.5 2.3e-12
NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  266 69.5 2.3e-12
NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  266 69.5 2.3e-12
NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  266 69.5 2.3e-12
NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147)  266 69.5 2.3e-12
NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148)  266 69.5 2.3e-12
NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152)  263 68.8 3.9e-12
NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179)  263 68.8 4.4e-12
XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173)  244 64.4 9.1e-11
NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176)  243 64.2 1.1e-10
NP_075567 (OMIM: 611362) ubiquitin-conjugating enz ( 354)  243 64.4 1.9e-10
XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110)  226 60.1 1.2e-09
NP_861517 (OMIM: 605574) ubiquitin-conjugating enz ( 140)  226 60.2 1.4e-09
NP_001287724 (OMIM: 602963) ubiquitin-conjugating  ( 118)  223 59.4   2e-09
XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118)  223 59.4   2e-09
NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118)  223 59.4   2e-09
NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152)  224 59.7 2.1e-09
NP_001191809 (OMIM: 602961) ubiquitin-conjugating  ( 109)  219 58.5 3.5e-09
NP_054895 (OMIM: 610538,616435) ubiquitin-conjugat ( 197)  221 59.1 4.1e-09
NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200)  221 59.1 4.2e-09
NP_919236 (OMIM: 601661) SUMO-conjugating enzyme U ( 158)  217 58.1 6.6e-09
NP_003336 (OMIM: 601661) SUMO-conjugating enzyme U ( 158)  217 58.1 6.6e-09
NP_919235 (OMIM: 601661) SUMO-conjugating enzyme U ( 158)  217 58.1 6.6e-09
NP_919237 (OMIM: 601661) SUMO-conjugating enzyme U ( 158)  217 58.1 6.6e-09
XP_016879129 (OMIM: 601661) PREDICTED: SUMO-conjug ( 158)  217 58.1 6.6e-09
XP_005255597 (OMIM: 601661) PREDICTED: SUMO-conjug ( 184)  216 57.9 8.7e-09
XP_005255598 (OMIM: 601661) PREDICTED: SUMO-conjug ( 184)  216 57.9 8.7e-09
XP_011520947 (OMIM: 601661) PREDICTED: SUMO-conjug ( 184)  216 57.9 8.7e-09
XP_011520946 (OMIM: 601661) PREDICTED: SUMO-conjug ( 184)  216 57.9 8.7e-09
XP_011516251 (OMIM: 612506) PREDICTED: ubiquitin-c ( 193)  211 56.8   2e-08


>>NP_060769 (OMIM: 614277) ubiquitin-conjugating enzyme   (180 aa)
 initn: 1060 init1: 1060 opt: 1060  Z-score: 1338.1  bits: 253.9 E(85289): 8.5e-68
Smith-Waterman score: 1060; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:30-180)

                                            10        20        30 
pF1KE3                              MASMQKRLQKELLALQNDPPPGMTLNEKSVQ
                                    :::::::::::::::::::::::::::::::
NP_060 MLSPRGVTRARQLLPLRLWPRRSWGDGSIMASMQKRLQKELLALQNDPPPGMTLNEKSVQ
               10        20        30        40        50        60

              40        50        60        70        80        90 
pF1KE3 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC
               70        80        90       100       110       120

             100       110       120       130       140       150 
pF1KE3 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
              130       140       150       160       170       180

>>NP_001001481 (OMIM: 614277) ubiquitin-conjugating enzy  (191 aa)
 initn: 1046 init1: 1029 opt: 1029  Z-score: 1298.8  bits: 246.7 E(85289): 1.3e-65
Smith-Waterman score: 1029; 100.0% identity (100.0% similar) in 146 aa overlap (6-151:46-191)

                                        10        20        30     
pF1KE3                          MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSIT
                                     ::::::::::::::::::::::::::::::
NP_001 LRLWPRRSWGDGSIMASMQTTGRRVEVWFPKRLQKELLALQNDPPPGMTLNEKSVQNSIT
          20        30        40        50        60        70     

          40        50        60        70        80        90     
pF1KE3 QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL
          80        90       100       110       120       130     

         100       110       120       130       140       150 
pF1KE3 TEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
         140       150       160       170       180       190 

>>NP_001257944 (OMIM: 614277) ubiquitin-conjugating enzy  (188 aa)
 initn: 1046 init1: 1028 opt: 1028  Z-score: 1297.7  bits: 246.5 E(85289): 1.5e-65
Smith-Waterman score: 1028; 99.3% identity (100.0% similar) in 148 aa overlap (1-148:30-177)

                                            10        20        30 
pF1KE3                              MASMQKRLQKELLALQNDPPPGMTLNEKSVQ
                                    :::::::::::::::::::::::::::::::
NP_001 MLSPRGVTRARQLLPLRLWPRRSWGDGSIMASMQKRLQKELLALQNDPPPGMTLNEKSVQ
               10        20        30        40        50        60

              40        50        60        70        80        90 
pF1KE3 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC
               70        80        90       100       110       120

             100       110       120       130       140       150 
pF1KE3 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.   
NP_001 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHELKS
              130       140       150       160       170       180

NP_001 AFILSITD
               

>>NP_001265483 (OMIM: 604151) ubiquitin-conjugating enzy  (207 aa)
 initn: 292 init1: 126 opt: 313  Z-score: 399.7  bits: 80.5 E(85289): 1.6e-15
Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173)

                                             10        20        30
pF1KE3                               MASMQKRLQKELLALQNDPPPGMTLNEKSV
                                     ...  ::.::::  .  ::::. . . :. 
NP_001 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG-
       30        40        50        60        70        80        

               40        50        60        70        80        90
pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI
        ..: .:   . : ::..:::  : : . ::: :::  :.: :  .    : .. :.: :
NP_001 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI
         90       100       110       120       130         140    

              100       110       120       130       140       150
pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT
       ::.:: ..:::::....: ::: :.:..:                               
NP_001 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR
          150       160       170       180       190       200    

>>NP_872619 (OMIM: 604151) ubiquitin-conjugating enzyme   (207 aa)
 initn: 292 init1: 126 opt: 313  Z-score: 399.7  bits: 80.5 E(85289): 1.6e-15
Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173)

                                             10        20        30
pF1KE3                               MASMQKRLQKELLALQNDPPPGMTLNEKSV
                                     ...  ::.::::  .  ::::. . . :. 
NP_872 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG-
       30        40        50        60        70        80        

               40        50        60        70        80        90
pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI
        ..: .:   . : ::..:::  : : . ::: :::  :.: :  .    : .. :.: :
NP_872 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI
         90       100       110       120       130         140    

              100       110       120       130       140       150
pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT
       ::.:: ..:::::....: ::: :.:..:                               
NP_872 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR
          150       160       170       180       190       200    

>>XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-conju  (207 aa)
 initn: 292 init1: 126 opt: 313  Z-score: 399.7  bits: 80.5 E(85289): 1.6e-15
Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173)

                                             10        20        30
pF1KE3                               MASMQKRLQKELLALQNDPPPGMTLNEKSV
                                     ...  ::.::::  .  ::::. . . :. 
XP_005 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG-
       30        40        50        60        70        80        

               40        50        60        70        80        90
pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI
        ..: .:   . : ::..:::  : : . ::: :::  :.: :  .    : .. :.: :
XP_005 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI
         90       100       110       120       130         140    

              100       110       120       130       140       150
pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT
       ::.:: ..:::::....: ::: :.:..:                               
XP_005 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR
          150       160       170       180       190       200    

>>NP_001265484 (OMIM: 604151) ubiquitin-conjugating enzy  (207 aa)
 initn: 292 init1: 126 opt: 313  Z-score: 399.7  bits: 80.5 E(85289): 1.6e-15
Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173)

                                             10        20        30
pF1KE3                               MASMQKRLQKELLALQNDPPPGMTLNEKSV
                                     ...  ::.::::  .  ::::. . . :. 
NP_001 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG-
       30        40        50        60        70        80        

               40        50        60        70        80        90
pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI
        ..: .:   . : ::..:::  : : . ::: :::  :.: :  .    : .. :.: :
NP_001 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI
         90       100       110       120       130         140    

              100       110       120       130       140       150
pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT
       ::.:: ..:::::....: ::: :.:..:                               
NP_001 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR
          150       160       170       180       190       200    

>>NP_006348 (OMIM: 604151) ubiquitin-conjugating enzyme   (207 aa)
 initn: 292 init1: 126 opt: 313  Z-score: 399.7  bits: 80.5 E(85289): 1.6e-15
Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173)

                                             10        20        30
pF1KE3                               MASMQKRLQKELLALQNDPPPGMTLNEKSV
                                     ...  ::.::::  .  ::::. . . :. 
NP_006 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG-
       30        40        50        60        70        80        

               40        50        60        70        80        90
pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI
        ..: .:   . : ::..:::  : : . ::: :::  :.: :  .    : .. :.: :
NP_006 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI
         90       100       110       120       130         140    

              100       110       120       130       140       150
pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT
       ::.:: ..:::::....: ::: :.:..:                               
NP_006 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR
          150       160       170       180       190       200    

>>XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-conju  (189 aa)
 initn: 304 init1: 126 opt: 307  Z-score: 392.8  bits: 79.1 E(85289): 3.9e-15
Smith-Waterman score: 307; 41.2% identity (67.2% similar) in 119 aa overlap (1-119:53-167)

                                             10        20        30
pF1KE3                               MASMQKRLQKELLALQNDPPPGMTLNEKSV
                                     ...  ::.::::  .  ::::. . . :. 
XP_005 QRESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKG-
             30        40        50        60        70        80  

               40        50        60        70        80        90
pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI
        ..: .:   . : ::..:::  : : . ::  :::  :.: :  .    : .. :.: :
XP_005 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI--YHCNINSQGVI
               90       100       110       120         130        

              100       110       120       130       140       150
pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT
       ::.:: ..:::::....: ::: :.:..:                               
XP_005 CLDILKDNWSPALTISKVLLSICSLLTDCNPGDFEAWPALPPSQLKWNLLP         
      140       150       160       170       180                  

>>XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-conju  (201 aa)
 initn: 286 init1: 126 opt: 307  Z-score: 392.4  bits: 79.1 E(85289): 4.1e-15
Smith-Waterman score: 307; 41.2% identity (67.2% similar) in 119 aa overlap (1-119:53-167)

                                             10        20        30
pF1KE3                               MASMQKRLQKELLALQNDPPPGMTLNEKSV
                                     ...  ::.::::  .  ::::. . . :. 
XP_005 QRESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKG-
             30        40        50        60        70        80  

               40        50        60        70        80        90
pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI
        ..: .:   . : ::..:::  : : . ::  :::  :.: :  .    : .. :.: :
XP_005 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI--YHCNINSQGVI
               90       100       110       120         130        

              100       110       120       130       140       150
pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT
       ::.:: ..:::::....: ::: :.:..:                               
XP_005 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR
      140       150       160       170       180       190        




151 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:18:27 2016 done: Sun Nov  6 02:18:28 2016
 Total Scan time:  5.270 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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