FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3033, 151 aa 1>>>pF1KE3033 151 - 151 aa - 151 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9387+/-0.000273; mu= 13.5245+/- 0.017 mean_var=63.4891+/-12.421, 0's: 0 Z-trim(120.1): 119 B-trim: 0 in 0/56 Lambda= 0.160962 statistics sampled from 34834 (34957) to 34834 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.41), width: 16 Scan time: 5.270 The best scores are: opt bits E(85289) NP_060769 (OMIM: 614277) ubiquitin-conjugating enz ( 180) 1060 253.9 8.5e-68 NP_001001481 (OMIM: 614277) ubiquitin-conjugating ( 191) 1029 246.7 1.3e-65 NP_001257944 (OMIM: 614277) ubiquitin-conjugating ( 188) 1028 246.5 1.5e-65 NP_001265483 (OMIM: 604151) ubiquitin-conjugating ( 207) 313 80.5 1.6e-15 NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 313 80.5 1.6e-15 XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207) 313 80.5 1.6e-15 NP_001265484 (OMIM: 604151) ubiquitin-conjugating ( 207) 313 80.5 1.6e-15 NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 313 80.5 1.6e-15 XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189) 307 79.1 3.9e-15 XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201) 307 79.1 4.1e-15 NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201) 307 79.1 4.1e-15 NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193) 305 78.6 5.4e-15 XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167) 301 77.6 9.2e-15 NP_001189405 (OMIM: 602916) ubiquitin-conjugating ( 160) 298 76.9 1.4e-14 NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147) 296 76.4 1.9e-14 NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152) 275 71.6 5.6e-13 NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149) 267 69.7 2e-12 NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 266 69.5 2.3e-12 NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 266 69.5 2.3e-12 NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 266 69.5 2.3e-12 NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 266 69.5 2.3e-12 NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 266 69.5 2.3e-12 NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 266 69.5 2.3e-12 NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 266 69.5 2.3e-12 NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147) 266 69.5 2.3e-12 NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148) 266 69.5 2.3e-12 NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152) 263 68.8 3.9e-12 NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179) 263 68.8 4.4e-12 XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173) 244 64.4 9.1e-11 NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176) 243 64.2 1.1e-10 NP_075567 (OMIM: 611362) ubiquitin-conjugating enz ( 354) 243 64.4 1.9e-10 XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110) 226 60.1 1.2e-09 NP_861517 (OMIM: 605574) ubiquitin-conjugating enz ( 140) 226 60.2 1.4e-09 NP_001287724 (OMIM: 602963) ubiquitin-conjugating ( 118) 223 59.4 2e-09 XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118) 223 59.4 2e-09 NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118) 223 59.4 2e-09 NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152) 224 59.7 2.1e-09 NP_001191809 (OMIM: 602961) ubiquitin-conjugating ( 109) 219 58.5 3.5e-09 NP_054895 (OMIM: 610538,616435) ubiquitin-conjugat ( 197) 221 59.1 4.1e-09 NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200) 221 59.1 4.2e-09 NP_919236 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 217 58.1 6.6e-09 NP_003336 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 217 58.1 6.6e-09 NP_919235 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 217 58.1 6.6e-09 NP_919237 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 217 58.1 6.6e-09 XP_016879129 (OMIM: 601661) PREDICTED: SUMO-conjug ( 158) 217 58.1 6.6e-09 XP_005255597 (OMIM: 601661) PREDICTED: SUMO-conjug ( 184) 216 57.9 8.7e-09 XP_005255598 (OMIM: 601661) PREDICTED: SUMO-conjug ( 184) 216 57.9 8.7e-09 XP_011520947 (OMIM: 601661) PREDICTED: SUMO-conjug ( 184) 216 57.9 8.7e-09 XP_011520946 (OMIM: 601661) PREDICTED: SUMO-conjug ( 184) 216 57.9 8.7e-09 XP_011516251 (OMIM: 612506) PREDICTED: ubiquitin-c ( 193) 211 56.8 2e-08 >>NP_060769 (OMIM: 614277) ubiquitin-conjugating enzyme (180 aa) initn: 1060 init1: 1060 opt: 1060 Z-score: 1338.1 bits: 253.9 E(85289): 8.5e-68 Smith-Waterman score: 1060; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:30-180) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQ ::::::::::::::::::::::::::::::: NP_060 MLSPRGVTRARQLLPLRLWPRRSWGDGSIMASMQKRLQKELLALQNDPPPGMTLNEKSVQ 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC 130 140 150 160 170 180 >>NP_001001481 (OMIM: 614277) ubiquitin-conjugating enzy (191 aa) initn: 1046 init1: 1029 opt: 1029 Z-score: 1298.8 bits: 246.7 E(85289): 1.3e-65 Smith-Waterman score: 1029; 100.0% identity (100.0% similar) in 146 aa overlap (6-151:46-191) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSIT :::::::::::::::::::::::::::::: NP_001 LRLWPRRSWGDGSIMASMQTTGRRVEVWFPKRLQKELLALQNDPPPGMTLNEKSVQNSIT 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE3 QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE3 TEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC 140 150 160 170 180 190 >>NP_001257944 (OMIM: 614277) ubiquitin-conjugating enzy (188 aa) initn: 1046 init1: 1028 opt: 1028 Z-score: 1297.7 bits: 246.5 E(85289): 1.5e-65 Smith-Waterman score: 1028; 99.3% identity (100.0% similar) in 148 aa overlap (1-148:30-177) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQ ::::::::::::::::::::::::::::::: NP_001 MLSPRGVTRARQLLPLRLWPRRSWGDGSIMASMQKRLQKELLALQNDPPPGMTLNEKSVQ 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::. NP_001 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHELKS 130 140 150 160 170 180 NP_001 AFILSITD >>NP_001265483 (OMIM: 604151) ubiquitin-conjugating enzy (207 aa) initn: 292 init1: 126 opt: 313 Z-score: 399.7 bits: 80.5 E(85289): 1.6e-15 Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV ... ::.:::: . ::::. . . :. NP_001 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG- 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI ..: .: . : ::..::: : : . ::: ::: :.: : . : .. :.: : NP_001 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT ::.:: ..:::::....: ::: :.:..: NP_001 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR 150 160 170 180 190 200 >>NP_872619 (OMIM: 604151) ubiquitin-conjugating enzyme (207 aa) initn: 292 init1: 126 opt: 313 Z-score: 399.7 bits: 80.5 E(85289): 1.6e-15 Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV ... ::.:::: . ::::. . . :. NP_872 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG- 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI ..: .: . : ::..::: : : . ::: ::: :.: : . : .. :.: : NP_872 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT ::.:: ..:::::....: ::: :.:..: NP_872 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR 150 160 170 180 190 200 >>XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-conju (207 aa) initn: 292 init1: 126 opt: 313 Z-score: 399.7 bits: 80.5 E(85289): 1.6e-15 Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV ... ::.:::: . ::::. . . :. XP_005 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG- 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI ..: .: . : ::..::: : : . ::: ::: :.: : . : .. :.: : XP_005 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT ::.:: ..:::::....: ::: :.:..: XP_005 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR 150 160 170 180 190 200 >>NP_001265484 (OMIM: 604151) ubiquitin-conjugating enzy (207 aa) initn: 292 init1: 126 opt: 313 Z-score: 399.7 bits: 80.5 E(85289): 1.6e-15 Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV ... ::.:::: . ::::. . . :. NP_001 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG- 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI ..: .: . : ::..::: : : . ::: ::: :.: : . : .. :.: : NP_001 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT ::.:: ..:::::....: ::: :.:..: NP_001 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR 150 160 170 180 190 200 >>NP_006348 (OMIM: 604151) ubiquitin-conjugating enzyme (207 aa) initn: 292 init1: 126 opt: 313 Z-score: 399.7 bits: 80.5 E(85289): 1.6e-15 Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV ... ::.:::: . ::::. . . :. NP_006 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG- 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI ..: .: . : ::..::: : : . ::: ::: :.: : . : .. :.: : NP_006 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT ::.:: ..:::::....: ::: :.:..: NP_006 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR 150 160 170 180 190 200 >>XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-conju (189 aa) initn: 304 init1: 126 opt: 307 Z-score: 392.8 bits: 79.1 E(85289): 3.9e-15 Smith-Waterman score: 307; 41.2% identity (67.2% similar) in 119 aa overlap (1-119:53-167) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV ... ::.:::: . ::::. . . :. XP_005 QRESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKG- 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI ..: .: . : ::..::: : : . :: ::: :.: : . : .. :.: : XP_005 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI--YHCNINSQGVI 90 100 110 120 130 100 110 120 130 140 150 pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT ::.:: ..:::::....: ::: :.:..: XP_005 CLDILKDNWSPALTISKVLLSICSLLTDCNPGDFEAWPALPPSQLKWNLLP 140 150 160 170 180 >>XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-conju (201 aa) initn: 286 init1: 126 opt: 307 Z-score: 392.4 bits: 79.1 E(85289): 4.1e-15 Smith-Waterman score: 307; 41.2% identity (67.2% similar) in 119 aa overlap (1-119:53-167) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV ... ::.:::: . ::::. . . :. XP_005 QRESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKG- 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI ..: .: . : ::..::: : : . :: ::: :.: : . : .. :.: : XP_005 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI--YHCNINSQGVI 90 100 110 120 130 100 110 120 130 140 150 pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT ::.:: ..:::::....: ::: :.:..: XP_005 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 140 150 160 170 180 190 151 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:18:27 2016 done: Sun Nov 6 02:18:28 2016 Total Scan time: 5.270 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]