FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3033, 151 aa 1>>>pF1KE3033 151 - 151 aa - 151 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1135+/-0.000568; mu= 12.4087+/- 0.035 mean_var=62.4262+/-12.186, 0's: 0 Z-trim(112.8): 60 B-trim: 0 in 0/51 Lambda= 0.162327 statistics sampled from 13466 (13531) to 13466 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.416), width: 16 Scan time: 1.890 The best scores are: opt bits E(32554) CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 1060 255.9 7.9e-69 CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 1029 248.7 1.3e-66 CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 313 81.0 4.1e-16 CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 307 79.6 1.1e-15 CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 305 79.1 1.4e-15 CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 298 77.5 3.8e-15 CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 296 77.0 4.9e-15 CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 285 74.4 2.9e-14 CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 275 72.1 1.5e-13 CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 267 70.2 5.4e-13 CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 266 69.9 6.3e-13 CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 266 69.9 6.3e-13 CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 266 70.0 6.4e-13 CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 263 69.3 1.1e-12 CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 263 69.3 1.2e-12 CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 243 64.6 3.1e-11 CCDS11540.2 UBE2Z gene_id:65264|Hs108|chr17 ( 354) 243 64.8 5.5e-11 >>CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 (180 aa) initn: 1060 init1: 1060 opt: 1060 Z-score: 1349.1 bits: 255.9 E(32554): 7.9e-69 Smith-Waterman score: 1060; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:30-180) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQ ::::::::::::::::::::::::::::::: CCDS47 MLSPRGVTRARQLLPLRLWPRRSWGDGSIMASMQKRLQKELLALQNDPPPGMTLNEKSVQ 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHIC 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC 130 140 150 160 170 180 >>CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 (191 aa) initn: 1046 init1: 1029 opt: 1029 Z-score: 1309.5 bits: 248.7 E(32554): 1.3e-66 Smith-Waterman score: 1029; 100.0% identity (100.0% similar) in 146 aa overlap (6-151:46-191) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSIT :::::::::::::::::::::::::::::: CCDS47 LRLWPRRSWGDGSIMASMQTTGRRVEVWFPKRLQKELLALQNDPPPGMTLNEKSVQNSIT 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE3 QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE3 TEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 TEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC 140 150 160 170 180 190 >>CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 (207 aa) initn: 292 init1: 126 opt: 313 Z-score: 402.8 bits: 81.0 E(32554): 4.1e-16 Smith-Waterman score: 313; 42.0% identity (68.1% similar) in 119 aa overlap (1-119:59-173) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV ... ::.:::: . ::::. . . :. CCDS22 APEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKG- 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI ..: .: . : ::..::: : : . ::: ::: :.: : . : .. :.: : CCDS22 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCNINSQGVI 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT ::.:: ..:::::....: ::: :.:..: CCDS22 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKR 150 160 170 180 190 200 >>CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 (201 aa) initn: 286 init1: 126 opt: 307 Z-score: 395.4 bits: 79.6 E(32554): 1.1e-15 Smith-Waterman score: 307; 41.2% identity (67.2% similar) in 119 aa overlap (1-119:53-167) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV ... ::.:::: . ::::. . . :. CCDS26 QRESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKG- 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI ..: .: . : ::..::: : : . :: ::: :.: : . : .. :.: : CCDS26 -DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI--YHCNINSQGVI 90 100 110 120 130 100 110 120 130 140 150 pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT ::.:: ..:::::....: ::: :.:..: CCDS26 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 140 150 160 170 180 190 >>CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 (193 aa) initn: 284 init1: 126 opt: 305 Z-score: 393.1 bits: 79.1 E(32554): 1.4e-15 Smith-Waterman score: 305; 40.3% identity (68.1% similar) in 119 aa overlap (1-119:45-159) 10 20 30 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSV ... ::.:::: . ::::. . . :. CCDS26 SSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKG- 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE3 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI ..: .: . : ::..::: : : . :. .::: :.: : . : .. :.: : CCDS26 -DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRI--YHCNINSQGVI 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE3 CLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDT ::.:: ..:::::....: ::: :.:..: CCDS26 CLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 140 150 160 170 180 190 >>CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 (160 aa) initn: 269 init1: 126 opt: 298 Z-score: 385.5 bits: 77.5 E(32554): 3.8e-15 Smith-Waterman score: 298; 40.9% identity (68.7% similar) in 115 aa overlap (5-119:16-126) 10 20 30 40 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLY ..:.:::: . ::::. . . :. ..: .: . : ::..: CCDS56 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKG--DNIYEWRSTILGPPGSVY 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 EGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVC :: : : . :. .::: :.: : . : .. :.: :::.:: ..:::::....: CCDS56 EGGVFFLDITFTPEYPFKPPKVTFRTRIY--HCNINSQGVICLDILKDNWSPALTISKVL 60 70 80 90 100 110 110 120 130 140 150 pF1KE3 LSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC ::: :.:..: CCDS56 LSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 120 130 140 150 160 >>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa) initn: 277 init1: 149 opt: 296 Z-score: 383.5 bits: 77.0 E(32554): 4.9e-15 Smith-Waterman score: 296; 37.8% identity (60.8% similar) in 143 aa overlap (6-145:4-141) 10 20 30 40 50 60 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF ::.:::: :: ::: . . : ... .: . . : : . :.: : : .: CCDS72 MALKRIQKELSDLQRDPPAHCSAG--PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHF 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCK . ::: :.. :: . ::.. ::: :::.:: .:::::.:..: ::: :.: . CCDS72 PTDYPFKPPKIAFTTKI--YHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCD-P 60 70 80 90 100 110 130 140 150 pF1KE3 EKRRP--PD-NSFYVRTCNKNPKKTKWWYHDDTC . : :: ..: .: .... : CCDS72 NPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 120 130 140 >>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa) initn: 281 init1: 149 opt: 285 Z-score: 369.6 bits: 74.4 E(32554): 2.9e-14 Smith-Waterman score: 285; 41.5% identity (62.6% similar) in 123 aa overlap (6-128:4-117) 10 20 30 40 50 60 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF ::.:::: :: ::: . . : ... .: . . : . :.: : : ..: CCDS54 MALKRIQKELTDLQRDPPAQCSAGP--VGDDLFHWQATIMGPNDSPYQGGVFFLTIHF 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCK . ::: :.: :: . ::.. ::: :::.:: .:::::.:..: ::: :.: : CCDS54 PTDYPFKPPKVAFTTKI--YHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLL--CD 60 70 80 90 100 110 130 140 150 pF1KE3 EKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC . ::. CCDS54 PN---PDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 120 130 140 >>CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 (152 aa) initn: 276 init1: 134 opt: 275 Z-score: 356.7 bits: 72.1 E(32554): 1.5e-13 Smith-Waterman score: 275; 35.0% identity (65.7% similar) in 137 aa overlap (5-141:6-136) 10 20 30 40 50 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFK ..::.... ::.::: :.. . .:.: :: . . : :: .: :.:... CCDS41 MSTPARRRLMRDFKRLQEDPPVGVSGAPS--ENNIMQWNAVIFGPEGTPFEDGTFKLVIE 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 FSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSC :: .:: : : : .. . ::.::..: :::.:: . :::. .:.:. :: :.:. CCDS41 FSEEYPNKPPTVRFLSKMF--HPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLD-- 60 70 80 90 100 110 120 130 140 150 pF1KE3 KEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC . . : :: .. ..: .. CCDS41 EPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS 120 130 140 150 >>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa) initn: 264 init1: 148 opt: 267 Z-score: 346.7 bits: 70.2 E(32554): 5.4e-13 Smith-Waterman score: 267; 39.1% identity (60.9% similar) in 128 aa overlap (1-128:1-119) 10 20 30 40 50 60 pF1KE3 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF : : .: :.::: : ::: . . : ... .: . . : . :.: : : ..: CCDS36 MLSNRKCLSKELSDLARDPPAQCSAG--PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCK . ::: :.: :: . ::.. ::: :::.:: .:::::....: ::: :.: : CCDS36 PTDYPFKPPKVAFTTRIY--HPNINSNGSICLDILRSQWSPALTISKVLLSICSLL--CD 60 70 80 90 100 110 130 140 150 pF1KE3 EKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC . ::. CCDS36 PN---PDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 151 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:18:26 2016 done: Sun Nov 6 02:18:27 2016 Total Scan time: 1.890 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]