FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6169, 63 aa
  1>>>pF1KE6169 63 - 63 aa - 63 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5011+/-0.000625; mu= 8.7228+/- 0.037
 mean_var=34.9195+/- 6.890, 0's: 0 Z-trim(106.9): 4  B-trim: 0 in 0/47
 Lambda= 0.217040
 statistics sampled from 9250 (9252) to 9250 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.284), width:  16
 Scan time:  1.040

The best scores are:                                      opt bits E(32554)
CCDS46680.1 UQCR10 gene_id:29796|Hs108|chr22       (  63)  407 133.5 8.6e-33
CCDS46681.1 UQCR10 gene_id:29796|Hs108|chr22       (  62)  311 103.4 9.4e-24


>>CCDS46680.1 UQCR10 gene_id:29796|Hs108|chr22            (63 aa)
 initn: 407 init1: 407 opt: 407  Z-score: 702.2  bits: 133.5 E(32554): 8.6e-33
Smith-Waterman score: 407; 100.0% identity (100.0% similar) in 63 aa overlap (1-63:1-63)

               10        20        30        40        50        60
pF1KE6 MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEGKLWKHIKHKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEGKLWKHIKHKY
               10        20        30        40        50        60

          
pF1KE6 ENK
       :::
CCDS46 ENK
          

>>CCDS46681.1 UQCR10 gene_id:29796|Hs108|chr22            (62 aa)
 initn: 311 init1: 311 opt: 311  Z-score: 539.9  bits: 103.4 E(32554): 9.4e-24
Smith-Waterman score: 311; 100.0% identity (100.0% similar) in 50 aa overlap (1-50:1-50)

               10        20        30        40        50        60
pF1KE6 MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEGKLWKHIKHKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS46 MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEGVRACAIPDLG
               10        20        30        40        50        60

          
pF1KE6 ENK
          
CCDS46 PA 
          




63 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:02:10 2016 done: Tue Nov  8 10:02:10 2016
 Total Scan time:  1.040 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]