FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1677, 193 aa 1>>>pF1KE1677 193 - 193 aa - 193 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4538+/-0.000402; mu= 12.2004+/- 0.025 mean_var=65.3709+/-13.452, 0's: 0 Z-trim(111.5): 11 B-trim: 893 in 2/48 Lambda= 0.158629 statistics sampled from 20114 (20122) to 20114 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.236), width: 16 Scan time: 5.270 The best scores are: opt bits E(85289) NP_001553 (OMIM: 600953) interleukin-18 isoform 1 ( 193) 1282 302.1 3.6e-82 XP_011541108 (OMIM: 600953) PREDICTED: interleukin ( 193) 1282 302.1 3.6e-82 XP_011541107 (OMIM: 600953) PREDICTED: interleukin ( 189) 1237 291.8 4.4e-79 NP_001230140 (OMIM: 600953) interleukin-18 isoform ( 189) 1237 291.8 4.4e-79 >>NP_001553 (OMIM: 600953) interleukin-18 isoform 1 prec (193 aa) initn: 1282 init1: 1282 opt: 1282 Z-score: 1596.3 bits: 302.1 E(85289): 3.6e-82 Smith-Waterman score: 1282; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193) 10 20 30 40 50 60 pF1KE1 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL 130 140 150 160 170 180 190 pF1KE1 GDRSIMFTVQNED ::::::::::::: NP_001 GDRSIMFTVQNED 190 >>XP_011541108 (OMIM: 600953) PREDICTED: interleukin-18 (193 aa) initn: 1282 init1: 1282 opt: 1282 Z-score: 1596.3 bits: 302.1 E(85289): 3.6e-82 Smith-Waterman score: 1282; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193) 10 20 30 40 50 60 pF1KE1 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL 130 140 150 160 170 180 190 pF1KE1 GDRSIMFTVQNED ::::::::::::: XP_011 GDRSIMFTVQNED 190 >>XP_011541107 (OMIM: 600953) PREDICTED: interleukin-18 (189 aa) initn: 1241 init1: 1081 opt: 1237 Z-score: 1540.8 bits: 291.8 E(85289): 4.4e-79 Smith-Waterman score: 1237; 97.9% identity (97.9% similar) in 193 aa overlap (1-193:1-189) 10 20 30 40 50 60 pF1KE1 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ :::::::::::::::::::::::::: :::::::::::::::::::::::::::::: XP_011 MAAEPVEDNCINFVAMKFIDNTLYFI----ENLESDYFGKLESKLSVIRNLNDQVLFIDQ 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL 120 130 140 150 160 170 190 pF1KE1 GDRSIMFTVQNED ::::::::::::: XP_011 GDRSIMFTVQNED 180 >>NP_001230140 (OMIM: 600953) interleukin-18 isoform 2 [ (189 aa) initn: 1241 init1: 1081 opt: 1237 Z-score: 1540.8 bits: 291.8 E(85289): 4.4e-79 Smith-Waterman score: 1237; 97.9% identity (97.9% similar) in 193 aa overlap (1-193:1-189) 10 20 30 40 50 60 pF1KE1 MAAEPVEDNCINFVAMKFIDNTLYFIAEDDENLESDYFGKLESKLSVIRNLNDQVLFIDQ :::::::::::::::::::::::::: :::::::::::::::::::::::::::::: NP_001 MAAEPVEDNCINFVAMKFIDNTLYFI----ENLESDYFGKLESKLSVIRNLNDQVLFIDQ 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GNRPLFEDMTDSDCRDNAPRTIFIISMYKDSQPRGMAVTISVKCEKISTLSCENKIISFK 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EMNPPDNIKDTKSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERDLFKLILKKEDEL 120 130 140 150 160 170 190 pF1KE1 GDRSIMFTVQNED ::::::::::::: NP_001 GDRSIMFTVQNED 180 193 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 10:46:30 2016 done: Sun Nov 6 10:46:30 2016 Total Scan time: 5.270 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]