FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3410, 310 aa 1>>>pF1KE3410 310 - 310 aa - 310 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1432+/-0.000331; mu= 8.6535+/- 0.021 mean_var=131.2194+/-27.251, 0's: 0 Z-trim(118.8): 11 B-trim: 1674 in 1/55 Lambda= 0.111963 statistics sampled from 32123 (32134) to 32123 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.377), width: 16 Scan time: 8.490 The best scores are: opt bits E(85289) NP_612639 (OMIM: 609514) transcription initiation ( 310) 1995 333.0 4.6e-91 XP_016865730 (OMIM: 609514) PREDICTED: transcripti ( 319) 1974 329.6 4.9e-90 XP_011512598 (OMIM: 609514) PREDICTED: transcripti ( 338) 1690 283.8 3.3e-76 XP_016865732 (OMIM: 609514) PREDICTED: transcripti ( 247) 1615 271.6 1.2e-72 XP_016865731 (OMIM: 609514) PREDICTED: transcripti ( 256) 1594 268.2 1.2e-71 XP_005248906 (OMIM: 609514) PREDICTED: transcripti ( 163) 1062 182.1 6.4e-46 XP_016865734 (OMIM: 609514) PREDICTED: transcripti ( 213) 1062 182.2 7.9e-46 XP_016865733 (OMIM: 609514) PREDICTED: transcripti ( 222) 1062 182.2 8.2e-46 >>NP_612639 (OMIM: 609514) transcription initiation fact (310 aa) initn: 1995 init1: 1995 opt: 1995 Z-score: 1755.9 bits: 333.0 E(85289): 4.6e-91 Smith-Waterman score: 1995; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310) 10 20 30 40 50 60 pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK 250 260 270 280 290 300 310 pF1KE3 PKIRRKKSLS :::::::::: NP_612 PKIRRKKSLS 310 >>XP_016865730 (OMIM: 609514) PREDICTED: transcription i (319 aa) initn: 1974 init1: 1974 opt: 1974 Z-score: 1737.4 bits: 329.6 E(85289): 4.9e-90 Smith-Waterman score: 1974; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306) 10 20 30 40 50 60 pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK 250 260 270 280 290 300 310 pF1KE3 PKIRRKKSLS :::::: XP_016 PKIRRKNRHGILLCCPGWS 310 >>XP_011512598 (OMIM: 609514) PREDICTED: transcription i (338 aa) initn: 1677 init1: 1677 opt: 1690 Z-score: 1489.1 bits: 283.8 E(85289): 3.3e-76 Smith-Waterman score: 1690; 86.1% identity (91.5% similar) in 316 aa overlap (1-310:1-313) 10 20 30 40 50 60 pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 DSSEQDEQTDTENLALHISMEDS------GAEKENTSVLQQNPSLSGSRNGEENIIDNPY :::::::::::::::::::: .: :.. .. . :: : . .: . ..... XP_011 DSSEQDEQTDTENLALHISMIESRSVTQAGVQWQDLGSLQPPPP-GFKRFSSLSLLSSWN 250 260 270 280 290 300 310 pF1KE3 LRPVKKPKIRRKKSLS : . .: ::. :: XP_011 YRRILEP--RRRTPLSCSRTPPCRVAGMGRRTSSITLICGR 300 310 320 330 >>XP_016865732 (OMIM: 609514) PREDICTED: transcription i (247 aa) initn: 1615 init1: 1615 opt: 1615 Z-score: 1425.6 bits: 271.6 E(85289): 1.2e-72 Smith-Waterman score: 1615; 100.0% identity (100.0% similar) in 247 aa overlap (64-310:1-247) 40 50 60 70 80 90 pF1KE3 RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI :::::::::::::::::::::::::::::: XP_016 MLQSYISEIGRSAKSYCEHTARTQPTLSDI 10 20 30 100 110 120 130 140 150 pF1KE3 VVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEF 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE3 PDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPL 100 110 120 130 140 150 220 230 240 250 260 270 pF1KE3 IAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVL 160 170 180 190 200 210 280 290 300 310 pF1KE3 QQNPSLSGSRNGEENIIDNPYLRPVKKPKIRRKKSLS ::::::::::::::::::::::::::::::::::::: XP_016 QQNPSLSGSRNGEENIIDNPYLRPVKKPKIRRKKSLS 220 230 240 >>XP_016865731 (OMIM: 609514) PREDICTED: transcription i (256 aa) initn: 1594 init1: 1594 opt: 1594 Z-score: 1407.0 bits: 268.2 E(85289): 1.2e-71 Smith-Waterman score: 1594; 100.0% identity (100.0% similar) in 243 aa overlap (64-306:1-243) 40 50 60 70 80 90 pF1KE3 RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI :::::::::::::::::::::::::::::: XP_016 MLQSYISEIGRSAKSYCEHTARTQPTLSDI 10 20 30 100 110 120 130 140 150 pF1KE3 VVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEF 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE3 PDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPL 100 110 120 130 140 150 220 230 240 250 260 270 pF1KE3 IAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVL 160 170 180 190 200 210 280 290 300 310 pF1KE3 QQNPSLSGSRNGEENIIDNPYLRPVKKPKIRRKKSLS ::::::::::::::::::::::::::::::::: XP_016 QQNPSLSGSRNGEENIIDNPYLRPVKKPKIRRKNRHGILLCCPGWS 220 230 240 250 >>XP_005248906 (OMIM: 609514) PREDICTED: transcription i (163 aa) initn: 1062 init1: 1062 opt: 1062 Z-score: 945.4 bits: 182.1 E(85289): 6.4e-46 Smith-Waterman score: 1062; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163) 10 20 30 40 50 60 pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA ::::::::::::::::::::::::::::::::::::::::::: XP_005 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP 130 140 150 160 190 200 210 220 230 240 pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET >>XP_016865734 (OMIM: 609514) PREDICTED: transcription i (213 aa) initn: 1369 init1: 1062 opt: 1062 Z-score: 943.7 bits: 182.2 E(85289): 7.9e-46 Smith-Waterman score: 1179; 68.7% identity (68.7% similar) in 310 aa overlap (1-310:1-213) 10 20 30 40 50 60 pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA ::::::::::::::::::::::::::::::::::::::::::: XP_016 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP----------------- 130 140 150 160 190 200 210 220 230 240 pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET XP_016 ------------------------------------------------------------ 250 260 270 280 290 300 pF1KE3 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK :::::::::::::::::::::::::::::::::::::::: XP_016 --------------------EDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK 170 180 190 200 310 pF1KE3 PKIRRKKSLS :::::::::: XP_016 PKIRRKKSLS 210 >>XP_016865733 (OMIM: 609514) PREDICTED: transcription i (222 aa) initn: 1348 init1: 1062 opt: 1062 Z-score: 943.5 bits: 182.2 E(85289): 8.2e-46 Smith-Waterman score: 1158; 68.3% identity (68.3% similar) in 306 aa overlap (1-306:1-209) 10 20 30 40 50 60 pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA ::::::::::::::::::::::::::::::::::::::::::: XP_016 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP----------------- 130 140 150 160 190 200 210 220 230 240 pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET XP_016 ------------------------------------------------------------ 250 260 270 280 290 300 pF1KE3 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK :::::::::::::::::::::::::::::::::::::::: XP_016 --------------------EDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK 170 180 190 200 310 pF1KE3 PKIRRKKSLS :::::: XP_016 PKIRRKNRHGILLCCPGWS 210 220 310 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:08:28 2016 done: Sun Nov 6 05:08:29 2016 Total Scan time: 8.490 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]