FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB3917, 1720 aa 1>>>pF1KB3917 1720 - 1720 aa - 1720 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.5535+/-0.000669; mu= 3.5959+/- 0.041 mean_var=289.2262+/-59.948, 0's: 0 Z-trim(113.3): 9 B-trim: 865 in 1/49 Lambda= 0.075415 statistics sampled from 22589 (22595) to 22589 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.265), width: 16 Scan time: 15.500 The best scores are: opt bits E(85289) NP_056240 (OMIM: 616404,616462) DNA-directed RNA p (1720) 11455 1262.4 0 NP_000928 (OMIM: 180660) DNA-directed RNA polymera (1970) 648 86.7 2.4e-15 NP_008986 (OMIM: 607694,614258) DNA-directed RNA p (1390) 485 68.8 4e-10 >>NP_056240 (OMIM: 616404,616462) DNA-directed RNA polym (1720 aa) initn: 11455 init1: 11455 opt: 11455 Z-score: 6752.0 bits: 1262.4 E(85289): 0 Smith-Waterman score: 11455; 99.9% identity (99.9% similar) in 1720 aa overlap (1-1720:1-1720) 10 20 30 40 50 60 pF1KB3 MLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 MLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 KEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 KEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB3 LCQLRVLEVGALQAVYELERILNRFLEENADPSASEIREELEQYTTEIVQNNLLGSQGAH ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: NP_056 LCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB3 VKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 VKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB3 EPLGIEEAQIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 EPLGIEEAQIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB3 FLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 FLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB3 DEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 DEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQI 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB3 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB3 RQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 RQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCR 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB3 HVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 HVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB3 SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRG 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB3 LTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 LTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKET 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB3 PRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 PRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTC 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB3 LARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 LARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYD 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB3 EVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 EVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQS 850 860 870 880 890 900 910 920 930 940 950 960 pF1KB3 GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KB3 PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KB3 EDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHFRAIKKWQSKHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 EDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALHHFRAIKKWQSKHP 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KB3 NTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 NTLLRRGAFLSYSQKIQEAVKALKLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAA 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KB3 ACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 ACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKW 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 pF1KB3 QRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 QRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 pF1KB3 TPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 TPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQ 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 pF1KB3 FLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAFRNVNTRRATQRDLDNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 FLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAFRNVNTRRATQRDLDNA 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 pF1KB3 GELGRSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEEREGEEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 GELGRSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEEREGEEN 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 pF1KB3 DDEDMQEERNPHREGARKTQEQDEEVGLGTEEDPSLPALLTQPRKPTHSQEPQGPEAMER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 DDEDMQEERNPHREGARKTQEQDEEVGLGTEEDPSLPALLTQPRKPTHSQEPQGPEAMER 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 pF1KB3 RVQAVREIHPFIDDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHGAVIYATKGIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 RVQAVREIHPFIDDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHGAVIYATKGIT 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 pF1KB3 RCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 RCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRV 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 pF1KB3 IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQF 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 pF1KB3 LKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELKQPLR :::::::::::::::::::::::::::::::::::::::: NP_056 LKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELKQPLR 1690 1700 1710 1720 >>NP_000928 (OMIM: 180660) DNA-directed RNA polymerase I (1970 aa) initn: 1614 init1: 457 opt: 648 Z-score: 396.7 bits: 86.7 E(85289): 2.4e-15 Smith-Waterman score: 1641; 27.3% identity (52.6% similar) in 1743 aa overlap (8-1715:14-1473) 10 20 30 40 50 pF1KB3 MLISKNMPWRRLQGISFGMYSAEELKKLSVK--SITNPRYLDSLGNPSANGLYD : : .. ..::. : .:::..:: .: :. .. : :. .::.: NP_000 MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEG-GRPKLGGLMD 10 20 30 40 50 60 70 80 90 100 110 pF1KB3 LALGPADSKEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTC : . :.::. ....: ::.::::: :.. .. : . .:: :. : NP_000 PRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC----- 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB3 PRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENADPSASEIREELEQYTTEIVQNN ...: .. .:. ..: . . . . . NP_000 ------------------------------SKLLVDSNNPKIKDILAKSKGQPKKRLTHV 120 130 140 180 190 200 210 220 230 pF1KB3 LLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVH .: ::.::. . :. : . : . ::.. . .. NP_000 YDLCKG---KNICEGGEE---------MDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIR 150 160 170 180 190 240 250 260 270 280 290 pF1KB3 RTAGQKDSEPLGIEEAQIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRF :.. . .: ..: . :. :.: ..: .. . .: : : ::: :. NP_000 RSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVL----------GMEPRY 200 210 220 230 240 300 310 320 330 340 350 pF1KB3 N-PSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKL : ... : ::: ::. . : . .: .: . :.: : . : :. NP_000 ARPEWMIVTVLPVPPLSVRPAVVM--QGSARNQD-DLTHKLADIVKINNQLRRNEQNGAA 250 260 270 280 290 360 370 380 390 400 pF1KB3 PEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKL-- . .: . :: :: :: . :.:. : NP_000 AHVIAEDV--------------------------KL------LQFHVATMVDNELPGLPR 300 310 320 410 420 430 440 450 460 pF1KB3 MMDK--YP--GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATK :.: : ...: :. ::: : ..::::::..::.:: :: .. ...:.: .:.. NP_000 AMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAAN 330 340 350 360 370 380 470 480 490 500 510 520 pF1KB3 LTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTP .:. . :::.:...:.. : : . .:::...: ..:.: .:. . : NP_000 MTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDR-----IDLR---------FHP 390 400 410 420 430 530 540 550 560 570 580 pF1KB3 ATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAY . . : : ::. .:::...:::::::. :...::.:::: ...::. . : NP_000 KPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-STFRLNLSVTTPY 440 450 460 470 480 490 590 600 610 620 630 640 pF1KB3 NADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRG :::::::::: :.::: ::: :: . .. ..:....:. :..:: ... ..: : NP_000 NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD 500 510 520 530 540 550 650 660 670 680 690 700 pF1KB3 CFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNL :. : . :.:.. :. :.: .:.:::: :::::::. : ::: :: NP_000 VFLERGEVMNLLMF-LSTWDGKVP--QPAILKPRPLWTGKQIFSL----IIP-GHINC-- 560 570 580 590 600 710 720 730 740 750 760 pF1KB3 SGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCC : .. . : : .. : ...:....:::. :.: : :.:: .::: NP_000 -----IRTHSTHPDDEDSGP-YKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHIS 610 620 630 640 650 770 780 790 800 810 820 pF1KB3 YEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQ : .: . . . . ... .: : .: :.:. : . :: : . :... . . : NP_000 YLEMGHDITRLFYSNIQTVINNWL-LIEGHTIGIGDSI----ADSKTYQDIQNTIKKAKQ 660 670 680 690 700 710 830 840 850 860 870 880 pF1KB3 AVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGL : ... : : .:. . : . :...::. :. . NP_000 DV---IEVIEKAHNNEL-----------EPTPGNTLRQTFENQVNRILNDARDKTGSSAQ 720 730 740 750 890 900 910 920 930 940 pF1KB3 HRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTP . :... :: :::::: .: :. ..:: ..::.: :. . ..:: : .. : NP_000 KSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGP 760 770 780 790 800 810 950 960 970 980 990 1000 pF1KB3 RAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDL .. ::: . .:.:. : ::::: :.:::::.::::::...::.:: .:: .:...:.:: NP_000 ESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDA 820 830 840 850 860 870 1010 1020 1030 1040 1050 pF1KB3 TVRDSDGSVVQFLYGEDGLDIPKTQF-----LQP------KQFPFLASNYEVIMKSQH-- :::.: ..:::. :::::: ...: :.: :.: : .: ... .. . NP_000 TVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQED 880 890 900 910 920 930 1060 1070 1080 1090 1100 1110 pF1KB3 -LHEVLSRADPKKALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESENR- ...::: : .. :. .... . . . : : . ..:. . :.. . . NP_000 LVKDVLSNAHIQNELE-----REFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQK 940 950 960 970 980 990 1120 1130 1140 1150 1160 pF1KB3 ----NGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETK : : :. . ... . : :. : . . : :: : :.. ... . NP_000 IFHINPRLPSDLHPIKVVEGVKELSK----KLVIVNGDDPLS--RQAQENATLLFNIHLR 1000 1010 1020 1030 1040 1170 1180 1190 1200 1210 1220 pF1KB3 VDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQM :.. : . . : : ..: : .. :..... .::: :: :::::.:::.::: NP_000 STLCSRRMAEEFRLSGE----AFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQM 1050 1060 1070 1080 1090 1100 1230 1240 1250 1260 1270 1280 pF1KB3 TLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLN-TKKALKRVKSLKKQL ::::::.:: . :::::.:::.:.. . : . ::: ..: .:. . . .:.:.. .: NP_000 TLNTFHYAGVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLLGQSARDAERAKDILCRL 1110 1120 1130 1140 1150 1160 1290 1300 1310 1320 1330 1340 pF1KB3 TRVCLGEVLQKIDVQ-----ESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILR .. : .: . . .: . : :. .:: .: . . :: : . NP_000 EHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDF--DVARISPWLLRVELDRK 1170 1180 1190 1200 1210 1350 1360 1370 1380 1390 1400 pF1KB3 FMETRFFKLLMESIKKKNNKASAFRNVNTRRATQRDLDNAGELGRSRGEQEGDEEEEGHI : : :: ::.: .: : :: .: . . .:.. : . NP_000 HMTDR--KLTMEQIAEKIN--------------------AG-FGDDLNCIFNDDNAEKLV 1220 1230 1240 1250 1410 1420 1430 1440 1450 1460 pF1KB3 VDAEAEEGDADASDAKRKEKQEEEVDYESEEEEEREGEENDDEDMQEERNPHREGARKTQ . . . :: .. ...:: :: ... : : : :: NP_000 LRIRIMN-----SDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMT-------------- 1260 1270 1280 1290 1470 1480 1490 1500 1510 1520 pF1KB3 EQDEEVGLGTEEDPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQYDTE .:....: NP_000 -----------------------------------------LQGIEQIS----------- 1300 1530 1540 1550 1560 1570 1580 pF1KB3 ESLWCQVTVKLPLMKINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNT .: ..:: : . . ...: . : .: .:.: NP_000 -----KVYMHLP----------------------QTDNKKKIIITEDGEFKALQEWILET 1310 1320 1330 1590 1600 1610 1620 1630 1640 pF1KB3 EGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRH .:..: .... .: : : :::: : .. ::::. ...:.:. :.. : :. :: NP_000 DGVSLMRVLSEKDV-DPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRH 1340 1350 1360 1370 1380 1390 1650 1660 1670 1680 1690 pF1KB3 LSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSAC :.:. : : .: ..: :. :....::.. .:: . . : .:. : : ... : NP_000 LALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSEN 1400 1410 1420 1430 1440 1450 1700 1710 1720 pF1KB3 LVVGKVVRGGTGLFELKQPLR ...:... .::: :.: NP_000 IMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAM 1460 1470 1480 1490 1500 1510 >>NP_008986 (OMIM: 607694,614258) DNA-directed RNA polym (1390 aa) initn: 1492 init1: 459 opt: 485 Z-score: 302.8 bits: 68.8 E(85289): 4e-10 Smith-Waterman score: 1498; 29.3% identity (55.0% similar) in 1311 aa overlap (10-1298:13-1118) 10 20 30 40 50 pF1KB3 MLISKNMPWRRLQGISFGMYSAEELKKLS-VKSITNPRY-LDSLGNPSANGLYDLAL .... : ::: : ::... . .. ... : :. : :. : . NP_008 MVKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRM 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB3 GPADSKEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRA : ... . : :: .....: :: :.:.: : .. : . .:. : .: : NP_008 GTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTC----C--- 70 80 90 100 110 120 130 140 150 160 170 pF1KB3 VIHLLLCQLRVLEVGALQAVYELERILNRFLEENADPSASEIREE-LEQYTTEIVQNNLL :..: : : .. .::. :. . .... :.. .. .. NP_008 --HIMLSQ-------------EEKK---QFLDYLKRPGLTYLQKRGLKKKISDKCRK--- 120 130 140 150 180 190 200 210 220 230 pF1KB3 GSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRT ::.:. . . . : . . ::...:: .. : :. : NP_008 -------KNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH-- 160 170 180 190 200 240 250 260 270 280 290 pF1KB3 AGQKDSEPLGIEEAQIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRF-- .:. ::: .:. :.:.:. : :: ::. . . . . NP_008 --NKEVEPL------LGR--------AQENLNPL-----VVLN-LFKRIPAEDVPLLLMN 210 220 230 240 300 310 320 330 340 pF1KB3 ----NPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQE .:: ..: :.::: :: : ..: . .. . .: . ..... .. .. NP_008 PEAGKPSDLILTRLLVPPLCIRP-SVVSD-LKSGTNEDDLTMKLTEIIFLNDVI----KK 250 260 270 280 290 350 360 370 380 390 400 pF1KB3 QKLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDK ... . : ..: : : :: . . ..::.. NP_008 HRI---------SGAKTQMIMED-------------------WDFLQLQCALYINSELSG 300 310 320 410 420 430 440 450 460 pF1KB3 LMMDKYP-----GIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFA . .. : :. : :. :.: :: .. :::::...:.:: :: . .:...:. : NP_008 IPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVA 330 340 350 360 370 380 470 480 490 500 510 520 pF1KB3 TKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLL ::.:. :. :.. ::. : :::.:::::... .. . . . . .:: .:..: NP_008 KILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHTQMKRF--LKYGNREKMAQEL- 390 400 410 420 430 440 530 540 550 560 570 580 pF1KB3 TPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCK . :: ::. .::..:.::::.::. ::.:: ::. :. ...:.. : NP_008 ---------KYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPH-RTFRFNECVCT 450 460 470 480 490 590 600 610 620 630 640 pF1KB3 AYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTT ::::::::::: :.::.: ..::: :: : . ..:..:.:: . ::: .... .: NP_008 PYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTL 500 510 520 530 540 550 650 660 670 680 690 700 pF1KB3 RGCFFTREHYMELVYRGLT--DKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHI . :: : . ... :. :. .:.: :.:::: ::::::. :..: : : NP_008 KDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR---PSDDN 560 570 580 590 600 610 710 720 730 740 750 pF1KB3 PLNLSGKAKITGKAWVKETPRSVPGFNPDSMC--ESQVIIREGELLCGVLDKAHYGS-SA :. . ..: :: . : . : .: .: : :...::. : .::. :: : NP_008 PVRANLRTK--GKQYC--------GKGED-LCANDSYVTIQNSELMSGSMDKGTLGSGSK 620 630 640 650 660 760 770 780 790 800 810 pF1KB3 YGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEE .. . . .: . .. ... :::: .::. :::..:. : : : . . . : NP_008 NNIFYILLRDWGQNEAADAMSRLARLAPVYLS-NRGFSIGIGD--VTPGQGLLKAKY--E 670 680 690 700 710 820 830 840 850 860 870 pF1KB3 STHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINK . : . . :: . :: :. .. .. . :: :.. .. .. NP_008 LLNAGYKKCDEYI---EALN----TGKLQQQPGCTAEETLEALILK---ELSVIRDHAGS 720 730 740 750 760 880 890 900 910 920 930 pF1KB3 ACMPFGLHRQFPE-NSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPC ::. :.. . :: :. :.::: .: :. .:: . : : : ..::: NP_008 ACL-----RELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPH 770 780 790 800 810 820 940 950 960 970 980 990 pF1KB3 FEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLE :: . : : :::.. : .:. : ::::: ::::::::::::::...::.:: ..: :: NP_008 FEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLE 830 840 850 860 870 880 1000 1010 1020 1030 1040 1050 pF1KB3 GLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFL-QPKQFPFLASNYEVIMKSQHLHEV : :::::::.: :...::.:: :::: . .: .: . .: .... NP_008 DLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCP----- 890 900 910 920 930 1060 1070 1080 1090 1100 1110 pF1KB3 LSRADPKKALHHFRAIKKWQSKHPNTLLRRGAFLSYSQK-IQEAVKALKLESENRNGRSP ..: :: . . : .: ..... :: ... .:: : .: NP_008 ---SEP--ALSKNELILTTES-----IMKKSEFLCCQDSFLQEIKKFIK----------- 940 950 960 970 1120 1130 1140 1150 1160 1170 pF1KB3 GTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDDYSQEWA :..: .. ..: :: . . .: . .: ..: . NP_008 GVSEKIK-------KTRDKYGINDNGTTEPRV------LY----------QLDRITP--- 980 990 1000 1180 1190 1200 1210 1220 1230 pF1KB3 AQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAG .:.:: : . : :..:. ::: ::: : :::::::.:::::.:::::: NP_008 TQVEKFLETCR---D--------KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1010 1020 1030 1040 1050 1240 1250 1260 1270 1280 1290 pF1KB3 RGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQ . ::.:::.::..::. :: :.::.... :. .. .: .. .. :::. . NP_008 VASMNITLGVPRIKEIIN-ASKAISTPIITAQ-LDKDDDADYARLVKGRIEKTLLGEISE 1060 1070 1080 1090 1100 1110 1300 1310 1320 1330 1340 1350 pF1KB3 KIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIK :. NP_008 YIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCV 1120 1130 1140 1150 1160 1170 1720 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:01:12 2016 done: Tue Nov 8 11:01:14 2016 Total Scan time: 15.500 Total Display time: 0.250 Function used was FASTA [36.3.4 Apr, 2011]