FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5284, 210 aa 1>>>pF1KE5284 210 - 210 aa - 210 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3405+/-0.000329; mu= 10.2904+/- 0.021 mean_var=115.2644+/-23.159, 0's: 0 Z-trim(118.6): 11 B-trim: 382 in 1/50 Lambda= 0.119461 statistics sampled from 31780 (31791) to 31780 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.373), width: 16 Scan time: 5.890 The best scores are: opt bits E(85289) NP_000354 (OMIM: 115210,191044,611880,613286,61369 ( 210) 1344 241.7 6.5e-64 NP_003272 (OMIM: 191042) troponin I, slow skeletal ( 187) 716 133.4 2.3e-31 NP_001139313 (OMIM: 191043,601680) troponin I, fas ( 182) 682 127.6 1.3e-29 NP_001139301 (OMIM: 191043,601680) troponin I, fas ( 182) 677 126.7 2.4e-29 NP_003273 (OMIM: 191043,601680) troponin I, fast s ( 182) 677 126.7 2.4e-29 >>NP_000354 (OMIM: 115210,191044,611880,613286,613690) t (210 aa) initn: 1344 init1: 1344 opt: 1344 Z-score: 1268.4 bits: 241.7 E(85289): 6.5e-64 Smith-Waterman score: 1344; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210) 10 20 30 40 50 60 pF1KE5 MADGSSDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MADGSSDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LEREAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LEREAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 NITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKED 130 140 150 160 170 180 190 200 210 pF1KE5 TEKENREVGDWRKNIDALSGMEGRKKKFES :::::::::::::::::::::::::::::: NP_000 TEKENREVGDWRKNIDALSGMEGRKKKFES 190 200 210 >>NP_003272 (OMIM: 191042) troponin I, slow skeletal mus (187 aa) initn: 718 init1: 594 opt: 716 Z-score: 684.1 bits: 133.4 E(85289): 2.3e-31 Smith-Waterman score: 716; 63.1% identity (82.7% similar) in 179 aa overlap (33-210:2-180) 10 20 30 40 50 60 pF1KE5 DGSSDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELE :....: ::.::::: ::.:.: ::. : NP_003 MPEVERKPKITASRKLLLKSLMLAKAKECWE 10 20 30 70 80 90 100 110 120 pF1KE5 REAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNI .: :::..:: : :. : :. ::... ::::::.:::.:. ::::::::::: .: NP_003 QEHEEREAEKVRYLAERIPTLQTRGLSLSALQDLCRELHAKVEVVDEERYDIEAKCLHNT 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 TEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTE :: :: :..::::::::: :::::.:::::..::::.. : :.::::.::.::::::: NP_003 REIKDLKLKVMDLRGKFKRPPLRRVRVSADAMLRALLGSKHKVSMDLRANLKSVKKEDTE 100 110 120 130 140 150 190 200 210 pF1KE5 KENR-EVGDWRKNIDALSGMEGRKKKFES :: ::::::::..:.:::::::: :.. NP_003 KERPVEVGDWRKNVEAMSGMEGRKKMFDAAKSPTSQ 160 170 180 >>NP_001139313 (OMIM: 191043,601680) troponin I, fast sk (182 aa) initn: 557 init1: 430 opt: 682 Z-score: 652.6 bits: 127.6 E(85289): 1.3e-29 Smith-Waterman score: 682; 57.6% identity (83.6% similar) in 177 aa overlap (36-210:5-180) 10 20 30 40 50 60 pF1KE5 SDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELEREA ::... ..:. .::...:::: :::.: NP_001 MSQCKKRNRAITARRQHLKSVMLQIAATELEKEE 10 20 30 70 80 90 100 110 120 pF1KE5 EERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEI .:..:: :. .: ::.. : ...:.:.::.::::..: ..::.::.:..: :. :. NP_001 SRREAEKQNYLAEHCPPLHIPG-SMSEVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKEL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 ADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN :..::.:::::::::: :::::.:::::..::::.. : .::::.:::::::::::: NP_001 EDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDLRANLKQVKKEDTEKER 100 110 120 130 140 150 190 200 210 pF1KE5 --REVGDWRKNIDALSGMEGRKKKFES :.::::::::. :::::::: ::: NP_001 DLRDVGDWRKNIEEKSGMEGRKKMFESES 160 170 180 >>NP_001139301 (OMIM: 191043,601680) troponin I, fast sk (182 aa) initn: 532 init1: 430 opt: 677 Z-score: 648.0 bits: 126.7 E(85289): 2.4e-29 Smith-Waterman score: 677; 57.1% identity (83.6% similar) in 177 aa overlap (36-210:5-180) 10 20 30 40 50 60 pF1KE5 SDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELEREA .:... ..:. .::...:::: :::.: NP_001 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEE 10 20 30 70 80 90 100 110 120 pF1KE5 EERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEI .:..:: :. .: ::.. : ...:.:.::.::::..: ..::.::.:..: :. :. NP_001 SRREAEKQNYLAEHCPPLHIPG-SMSEVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKEL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 ADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN :..::.:::::::::: :::::.:::::..::::.. : .::::.:::::::::::: NP_001 EDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDLRANLKQVKKEDTEKER 100 110 120 130 140 150 190 200 210 pF1KE5 --REVGDWRKNIDALSGMEGRKKKFES :.::::::::. :::::::: ::: NP_001 DLRDVGDWRKNIEEKSGMEGRKKMFESES 160 170 180 >>NP_003273 (OMIM: 191043,601680) troponin I, fast skele (182 aa) initn: 532 init1: 430 opt: 677 Z-score: 648.0 bits: 126.7 E(85289): 2.4e-29 Smith-Waterman score: 677; 57.1% identity (83.6% similar) in 177 aa overlap (36-210:5-180) 10 20 30 40 50 60 pF1KE5 SDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELEREA .:... ..:. .::...:::: :::.: NP_003 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEE 10 20 30 70 80 90 100 110 120 pF1KE5 EERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEI .:..:: :. .: ::.. : ...:.:.::.::::..: ..::.::.:..: :. :. NP_003 SRREAEKQNYLAEHCPPLHIPG-SMSEVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKEL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 ADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN :..::.:::::::::: :::::.:::::..::::.. : .::::.:::::::::::: NP_003 EDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDLRANLKQVKKEDTEKER 100 110 120 130 140 150 190 200 210 pF1KE5 --REVGDWRKNIDALSGMEGRKKKFES :.::::::::. :::::::: ::: NP_003 DLRDVGDWRKNIEEKSGMEGRKKMFESES 160 170 180 210 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:24:47 2016 done: Mon Nov 7 23:24:48 2016 Total Scan time: 5.890 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]