FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5175, 136 aa
  1>>>pF1KE5175 136 - 136 aa - 136 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5966+/-0.000315; mu= 11.3129+/- 0.020
 mean_var=86.9645+/-18.159, 0's: 0 Z-trim(117.5): 39  B-trim: 1163 in 1/54
 Lambda= 0.137532
 statistics sampled from 29459 (29498) to 29459 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.346), width:  16
 Scan time:  5.170

The best scores are:                                      opt bits E(85289)
NP_003125 (OMIM: 600708) signal recognition partic ( 136)  837 174.9 3.5e-44
NP_001296363 (OMIM: 600708) signal recognition par (  88)  386 85.3 2.2e-17


>>NP_003125 (OMIM: 600708) signal recognition particle 1  (136 aa)
 initn: 837 init1: 837 opt: 837  Z-score: 914.2  bits: 174.9 E(85289): 3.5e-44
Smith-Waterman score: 837; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKAAAAAAAAAPAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKAAAAAAAAAPAAA
               70        80        90       100       110       120

              130      
pF1KE5 ATAPTTAATTAATAAQ
       ::::::::::::::::
NP_003 ATAPTTAATTAATAAQ
              130      

>>NP_001296363 (OMIM: 600708) signal recognition particl  (88 aa)
 initn: 386 init1: 386 opt: 386  Z-score: 433.2  bits: 85.3 E(85289): 2.2e-17
Smith-Waterman score: 386; 100.0% identity (100.0% similar) in 66 aa overlap (71-136:23-88)

               50        60        70        80        90       100
pF1KE5 PKKGTVEGFEPADNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKK
                                     ::::::::::::::::::::::::::::::
NP_001         MGRRRSALWEKTQCHLSKGFQEVSSKEVNKFQMAYSNLLRANMDGLKKRDKK
                       10        20        30        40        50  

              110       120       130      
pF1KE5 NKTKKTKAAAAAAAAAPAAAATAPTTAATTAATAAQ
       ::::::::::::::::::::::::::::::::::::
NP_001 NKTKKTKAAAAAAAAAPAAAATAPTTAATTAATAAQ
             60        70        80        




136 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:18:27 2016 done: Mon Nov  7 22:18:27 2016
 Total Scan time:  5.170 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]