FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5175, 136 aa 1>>>pF1KE5175 136 - 136 aa - 136 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9223+/-0.000751; mu= 9.4546+/- 0.046 mean_var=87.3349+/-17.699, 0's: 0 Z-trim(110.3): 5 B-trim: 0 in 0/52 Lambda= 0.137240 statistics sampled from 11495 (11497) to 11495 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.353), width: 16 Scan time: 1.760 The best scores are: opt bits E(32554) CCDS42017.1 SRP14 gene_id:6727|Hs108|chr15 ( 136) 837 174.6 1.7e-44 >>CCDS42017.1 SRP14 gene_id:6727|Hs108|chr15 (136 aa) initn: 837 init1: 837 opt: 837 Z-score: 912.5 bits: 174.6 E(32554): 1.7e-44 Smith-Waterman score: 837; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136) 10 20 30 40 50 60 pF1KE5 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKAAAAAAAAAPAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKAAAAAAAAAPAAA 70 80 90 100 110 120 130 pF1KE5 ATAPTTAATTAATAAQ :::::::::::::::: CCDS42 ATAPTTAATTAATAAQ 130 136 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:18:26 2016 done: Mon Nov 7 22:18:26 2016 Total Scan time: 1.760 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]