Result of FASTA (ccds) for pFN21AE5175
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5175, 136 aa
  1>>>pF1KE5175 136 - 136 aa - 136 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9223+/-0.000751; mu= 9.4546+/- 0.046
 mean_var=87.3349+/-17.699, 0's: 0 Z-trim(110.3): 5  B-trim: 0 in 0/52
 Lambda= 0.137240
 statistics sampled from 11495 (11497) to 11495 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.353), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS42017.1 SRP14 gene_id:6727|Hs108|chr15         ( 136)  837 174.6 1.7e-44


>>CCDS42017.1 SRP14 gene_id:6727|Hs108|chr15              (136 aa)
 initn: 837 init1: 837 opt: 837  Z-score: 912.5  bits: 174.6 E(32554): 1.7e-44
Smith-Waterman score: 837; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKAAAAAAAAAPAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKAAAAAAAAAPAAA
               70        80        90       100       110       120

              130      
pF1KE5 ATAPTTAATTAATAAQ
       ::::::::::::::::
CCDS42 ATAPTTAATTAATAAQ
              130      




136 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:18:26 2016 done: Mon Nov  7 22:18:26 2016
 Total Scan time:  1.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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