FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5295, 204 aa 1>>>pF1KE5295 204 - 204 aa - 204 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6024+/-0.000709; mu= 6.8826+/- 0.043 mean_var=179.1788+/-35.303, 0's: 0 Z-trim(117.0): 11 B-trim: 135 in 1/52 Lambda= 0.095814 statistics sampled from 17656 (17663) to 17656 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.543), width: 16 Scan time: 1.750 The best scores are: opt bits E(32554) CCDS41795.1 PYM1 gene_id:84305|Hs108|chr12 ( 204) 1304 190.8 5.1e-49 CCDS44916.1 PYM1 gene_id:84305|Hs108|chr12 ( 203) 1234 181.1 4.1e-46 >>CCDS41795.1 PYM1 gene_id:84305|Hs108|chr12 (204 aa) initn: 1304 init1: 1304 opt: 1304 Z-score: 993.6 bits: 190.8 E(32554): 5.1e-49 Smith-Waterman score: 1304; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE5 MEAAGSPAATETGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKPELP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MEAAGSPAATETGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKPELP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 PGLSPEATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 PGLSPEATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSLEE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TAQLPSAPQGSRAAPTAASDQPDSAATTEKAKKIKNLKKKLRQVEELQQRIQAGEVSQPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 TAQLPSAPQGSRAAPTAASDQPDSAATTEKAKKIKNLKKKLRQVEELQQRIQAGEVSQPS 130 140 150 160 170 180 190 200 pF1KE5 KEQLEKLARRRALEEELEDLELGL :::::::::::::::::::::::: CCDS41 KEQLEKLARRRALEEELEDLELGL 190 200 >>CCDS44916.1 PYM1 gene_id:84305|Hs108|chr12 (203 aa) initn: 1232 init1: 1232 opt: 1234 Z-score: 941.3 bits: 181.1 E(32554): 4.1e-46 Smith-Waterman score: 1234; 96.5% identity (98.0% similar) in 201 aa overlap (6-204:3-203) 10 20 30 40 50 pF1KE5 MEAAGSPAATET--GKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKPE .: .:. :::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MATPYVTDETGGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKPE 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 LPPGLSPEATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 LPPGLSPEATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSL 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 EETAQLPSAPQGSRAAPTAASDQPDSAATTEKAKKIKNLKKKLRQVEELQQRIQAGEVSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 EETAQLPSAPQGSRAAPTAASDQPDSAATTEKAKKIKNLKKKLRQVEELQQRIQAGEVSQ 120 130 140 150 160 170 180 190 200 pF1KE5 PSKEQLEKLARRRALEEELEDLELGL :::::::::::::::::::::::::: CCDS44 PSKEQLEKLARRRALEEELEDLELGL 180 190 200 204 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:29:44 2016 done: Mon Nov 7 23:29:45 2016 Total Scan time: 1.750 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]