FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5334, 261 aa 1>>>pF1KE5334 261 - 261 aa - 261 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0436+/-0.000393; mu= 16.2221+/- 0.024 mean_var=63.6557+/-12.839, 0's: 0 Z-trim(112.0): 6 B-trim: 27 in 2/53 Lambda= 0.160752 statistics sampled from 20816 (20820) to 20816 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.244), width: 16 Scan time: 5.740 The best scores are: opt bits E(85289) NP_037479 (OMIM: 300767) replication protein A 30 ( 261) 1717 406.9 1.9e-113 NP_002937 (OMIM: 179836) replication protein A 32 ( 270) 708 172.9 5.5e-43 NP_001284487 (OMIM: 179836) replication protein A ( 278) 701 171.2 1.7e-42 NP_001273005 (OMIM: 179836) replication protein A ( 174) 441 110.8 1.7e-24 >>NP_037479 (OMIM: 300767) replication protein A 30 kDa (261 aa) initn: 1717 init1: 1717 opt: 1717 Z-score: 2157.5 bits: 406.9 E(85289): 1.9e-113 Smith-Waterman score: 1717; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261) 10 20 30 40 50 60 pF1KE5 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKTQRPKVRIQDVVPCNVNQLLSSTVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKTQRPKVRIQDVVPCNVNQLLSSTVF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 DPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVKQVTPLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 DPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVKQVTPLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 VGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 PVSPSEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 PVSPSEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAID 190 200 210 220 230 240 250 260 pF1KE5 YLTVEGHIYPTVDREHFKSAD ::::::::::::::::::::: NP_037 YLTVEGHIYPTVDREHFKSAD 250 260 >>NP_002937 (OMIM: 179836) replication protein A 32 kDa (270 aa) initn: 702 init1: 315 opt: 708 Z-score: 892.7 bits: 172.9 E(85289): 5.5e-43 Smith-Waterman score: 708; 45.9% identity (72.2% similar) in 270 aa overlap (1-261:1-268) 10 20 30 40 50 pF1KE5 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKT--QRPKVRIQDVVPCNVNQLLSST : .::: :::: : :..:: : ..:: . .. ..: : .:::...::::.: NP_002 MWNSGFESYGSSSY--GGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSAT 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 VFDPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVK-QVT . : ::.. .. .:::.:::.:: :::: ..: :::::::: :...::: . .. . : NP_002 LVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 PLSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTV . .:::: : :. . ::: ..:: ::::::::.::::..::::.:.:: . .. NP_002 VVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSA 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 ESVPVS-P--SEVNDAGDNDESHRNFI---QDEVLRLIHECPHQEGKSIHELRAQLCDLS .:.: : ::... : :. : . :..:: ::. ::. :: ....:. :: .: NP_002 GRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMS 180 190 200 210 220 230 240 250 260 pF1KE5 VKAIKEAIDYLTVEGHIYPTVDREHFKSAD :..::.:.:.:. ::::: ::: .::::.: NP_002 VSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE 240 250 260 270 >>NP_001284487 (OMIM: 179836) replication protein A 32 k (278 aa) initn: 695 init1: 308 opt: 701 Z-score: 883.7 bits: 171.2 E(85289): 1.7e-42 Smith-Waterman score: 701; 45.7% identity (71.7% similar) in 269 aa overlap (2-261:10-276) 10 20 30 40 50 pF1KE5 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKT--QRPKVRIQDVVPCN : :: :::: : :..:: : ..:: . .. ..: : .:::. NP_001 MGRGDRNKRSIRGFESYGSSSY--GGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCT 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 VNQLLSSTVFDPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGR ..::::.:. : ::.. .. .:::.:::.:: :::: ..: :::::::: :...::: NP_001 ISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDT 60 70 80 90 100 110 120 130 140 150 160 pF1KE5 EKVK-QVTPLSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLD . .. . : . .:::: : :. . ::: ..:: ::::::::.::::..::::.:. NP_001 DDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLS 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE5 KARRDTTVESVPVS-P--SEVNDAGDNDESHRNFI---QDEVLRLIHECPHQEGKSIHEL :: . .. .:.: : ::... : :. : . :..:: ::. ::. :: ....: NP_001 KANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDL 180 190 200 210 220 230 230 240 250 260 pF1KE5 RAQLCDLSVKAIKEAIDYLTVEGHIYPTVDREHFKSAD . :: .::..::.:.:.:. ::::: ::: .::::.: NP_001 KNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE 240 250 260 270 >>NP_001273005 (OMIM: 179836) replication protein A 32 k (174 aa) initn: 446 init1: 213 opt: 441 Z-score: 560.8 bits: 110.8 E(85289): 1.7e-24 Smith-Waterman score: 441; 45.3% identity (72.1% similar) in 172 aa overlap (97-261:1-172) 70 80 90 100 110 120 pF1KE5 RGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVK-QVTPLSVGVYV ::: :...::: . .. . : . .:: NP_001 MTAAPMDVRQWVDTDDTSSENTVVPPETYV 10 20 30 130 140 150 160 170 180 pF1KE5 KVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESVPVS-P :: : :. . ::: ..:: ::::::::.::::..::::.:.:: . .. .:.: : NP_001 KVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNP 40 50 60 70 80 90 190 200 210 220 230 pF1KE5 --SEVNDAGDNDESHRNFI---QDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAI ::... : :. : . :..:: ::. ::. :: ....:. :: .::..::.:. NP_001 GMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAV 100 110 120 130 140 150 240 250 260 pF1KE5 DYLTVEGHIYPTVDREHFKSAD :.:. ::::: ::: .::::.: NP_001 DFLSNEGHIYSTVDDDHFKSTDAE 160 170 261 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:52:38 2016 done: Mon Nov 7 23:52:39 2016 Total Scan time: 5.740 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]