FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5334, 261 aa 1>>>pF1KE5334 261 - 261 aa - 261 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4173+/-0.000883; mu= 13.9580+/- 0.053 mean_var=63.4360+/-12.784, 0's: 0 Z-trim(105.5): 11 B-trim: 0 in 0/50 Lambda= 0.161030 statistics sampled from 8441 (8445) to 8441 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.259), width: 16 Scan time: 2.050 The best scores are: opt bits E(32554) CCDS35345.1 RPA4 gene_id:29935|Hs108|chrX ( 261) 1717 407.5 4.8e-114 CCDS314.1 RPA2 gene_id:6118|Hs108|chr1 ( 270) 708 173.1 1.8e-43 CCDS72740.1 RPA2 gene_id:6118|Hs108|chr1 ( 278) 701 171.5 5.8e-43 >>CCDS35345.1 RPA4 gene_id:29935|Hs108|chrX (261 aa) initn: 1717 init1: 1717 opt: 1717 Z-score: 2160.9 bits: 407.5 E(32554): 4.8e-114 Smith-Waterman score: 1717; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261) 10 20 30 40 50 60 pF1KE5 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKTQRPKVRIQDVVPCNVNQLLSSTVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKTQRPKVRIQDVVPCNVNQLLSSTVF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 DPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVKQVTPLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 DPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVKQVTPLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 VGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 PVSPSEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 PVSPSEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAID 190 200 210 220 230 240 250 260 pF1KE5 YLTVEGHIYPTVDREHFKSAD ::::::::::::::::::::: CCDS35 YLTVEGHIYPTVDREHFKSAD 250 260 >>CCDS314.1 RPA2 gene_id:6118|Hs108|chr1 (270 aa) initn: 702 init1: 315 opt: 708 Z-score: 893.8 bits: 173.1 E(32554): 1.8e-43 Smith-Waterman score: 708; 45.9% identity (72.2% similar) in 270 aa overlap (1-261:1-268) 10 20 30 40 50 pF1KE5 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKT--QRPKVRIQDVVPCNVNQLLSST : .::: :::: : :..:: : ..:: . .. ..: : .:::...::::.: CCDS31 MWNSGFESYGSSSY--GGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSAT 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 VFDPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVK-QVT . : ::.. .. .:::.:::.:: :::: ..: :::::::: :...::: . .. . : CCDS31 LVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 PLSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTV . .:::: : :. . ::: ..:: ::::::::.::::..::::.:.:: . .. CCDS31 VVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSA 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 ESVPVS-P--SEVNDAGDNDESHRNFI---QDEVLRLIHECPHQEGKSIHELRAQLCDLS .:.: : ::... : :. : . :..:: ::. ::. :: ....:. :: .: CCDS31 GRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMS 180 190 200 210 220 230 240 250 260 pF1KE5 VKAIKEAIDYLTVEGHIYPTVDREHFKSAD :..::.:.:.:. ::::: ::: .::::.: CCDS31 VSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE 240 250 260 270 >>CCDS72740.1 RPA2 gene_id:6118|Hs108|chr1 (278 aa) initn: 695 init1: 308 opt: 701 Z-score: 884.9 bits: 171.5 E(32554): 5.8e-43 Smith-Waterman score: 701; 45.7% identity (71.7% similar) in 269 aa overlap (2-261:10-276) 10 20 30 40 50 pF1KE5 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKT--QRPKVRIQDVVPCN : :: :::: : :..:: : ..:: . .. ..: : .:::. CCDS72 MGRGDRNKRSIRGFESYGSSSY--GGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCT 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 VNQLLSSTVFDPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGR ..::::.:. : ::.. .. .:::.:::.:: :::: ..: :::::::: :...::: CCDS72 ISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDT 60 70 80 90 100 110 120 130 140 150 160 pF1KE5 EKVK-QVTPLSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLD . .. . : . .:::: : :. . ::: ..:: ::::::::.::::..::::.:. CCDS72 DDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLS 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE5 KARRDTTVESVPVS-P--SEVNDAGDNDESHRNFI---QDEVLRLIHECPHQEGKSIHEL :: . .. .:.: : ::... : :. : . :..:: ::. ::. :: ....: CCDS72 KANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDL 180 190 200 210 220 230 230 240 250 260 pF1KE5 RAQLCDLSVKAIKEAIDYLTVEGHIYPTVDREHFKSAD . :: .::..::.:.:.:. ::::: ::: .::::.: CCDS72 KNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE 240 250 260 270 261 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:52:38 2016 done: Mon Nov 7 23:52:38 2016 Total Scan time: 2.050 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]