FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3048, 189 aa 1>>>pF1KE3048 189 - 189 aa - 189 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3807+/-0.000842; mu= 12.0800+/- 0.050 mean_var=61.0167+/-12.337, 0's: 0 Z-trim(105.9): 28 B-trim: 0 in 0/49 Lambda= 0.164191 statistics sampled from 8667 (8691) to 8667 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.267), width: 16 Scan time: 1.720 The best scores are: opt bits E(32554) CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1241 302.3 1.2e-82 CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1144 279.3 9.7e-76 CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1140 278.4 1.9e-75 CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1130 276.0 9.6e-75 CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1079 263.9 4.2e-71 CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1061 259.6 8e-70 CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1030 252.3 1.3e-67 CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1022 250.4 4.8e-67 CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 959 235.5 1.5e-62 CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 958 235.2 1.8e-62 CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 954 234.3 3.4e-62 CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 953 234.1 4e-62 CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 951 233.6 5.6e-62 CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 685 170.6 5.3e-43 CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 355 92.4 1.9e-19 CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 330 86.5 1.1e-17 >>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa) initn: 1241 init1: 1241 opt: 1241 Z-score: 1597.4 bits: 302.3 E(32554): 1.2e-82 Smith-Waterman score: 1241; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD ::::::::: CCDS34 LKKGLRRKD >>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa) initn: 1144 init1: 1144 opt: 1144 Z-score: 1473.3 bits: 279.3 E(32554): 9.7e-76 Smith-Waterman score: 1144; 93.7% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: ::::::.:::::::::::::::::::::: ::::::::::::::: ::::::::.: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::::::::::::::::: ::::::::::::::: :::::::::::::::::::.::::: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.: ::::: CCDS64 LQKRLRRKD >>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa) initn: 1140 init1: 1140 opt: 1140 Z-score: 1468.1 bits: 278.4 E(32554): 1.9e-75 Smith-Waterman score: 1140; 92.1% identity (97.9% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: ::::::.:::::::::::::::::::::: ::::::::.:::::::::::::::.:: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::.:::::::::::::::::::::::::::::::::::::::::::::: CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::::::::::::::::: :::::::::::::::.:.:::::::::::::::::.::::: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.: ::::: CCDS64 LQKRLRRKD >>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa) initn: 1130 init1: 1130 opt: 1130 Z-score: 1455.3 bits: 276.0 E(32554): 9.6e-75 Smith-Waterman score: 1130; 92.1% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: ::::::.:::::::::::::::::::::: ::::::::::::::::::::::::.: CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::::::::::::::::::::::::::::::::::::::::::::::.:: CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN ::::::::.::::::::: ::::::::::::::: :::::::::::::::::::.::::: CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.: ::::: CCDS65 LQKILRRKD >>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa) initn: 1113 init1: 1079 opt: 1079 Z-score: 1390.1 bits: 263.9 E(32554): 4.2e-71 Smith-Waterman score: 1079; 87.8% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: ::::::.:::::::::::::::::::::: ::::::::::::::::::::::::.: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::::::::::::.::::.::::::::::::: ::::::: CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::::::::::::::: : ::::.:::::::::: :::::::::::::::::::::.: CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE3 LKKGLRRKD ... ::::. CCDS64 FQERLRRKE >>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa) initn: 1061 init1: 1061 opt: 1061 Z-score: 1367.0 bits: 259.6 E(32554): 8e-70 Smith-Waterman score: 1061; 85.7% identity (93.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: ::::::.:::::::::::::::::::::: ::::::::::::::: :::::::..: CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.: :::.::::.::::..:::::::::::::.::::::...::.:: ::.::::::: CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN ::: ::::::: ::::: :::::::::::::::: :::::::::::::::::::::::: CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.::::::: CCDS34 LQKGLRRKD >>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa) initn: 1030 init1: 1030 opt: 1030 Z-score: 1327.3 bits: 252.3 E(32554): 1.3e-67 Smith-Waterman score: 1030; 81.0% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: :.:.:...::: :: :::::.: ::::: :::.:.:.::: ::::::::::::.:. CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::.:::::::::..:::::...::::: ::.::.:::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::::::::::::::::: ::::.::::::::::::::::::::::::::::::.::::: CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.: ::::: CCDS65 LQKRLRRKD >>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa) initn: 1039 init1: 1022 opt: 1022 Z-score: 1317.1 bits: 250.4 E(32554): 4.8e-67 Smith-Waterman score: 1022; 79.9% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: : :::...::. :::::::::::::::: :::.:...::::::::::::::::.: CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::::::::::::.::::.:...::.:: ::::::::::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN ::..::::::.::::: : ::.:::::::::::: :::::::::::::::::::::.:.: CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.. ::::. CCDS65 LQERLRRKE >>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa) initn: 974 init1: 959 opt: 959 Z-score: 1236.4 bits: 235.5 E(32554): 1.5e-62 Smith-Waterman score: 959; 77.8% identity (90.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: :.:::...::: :: ::: ::::::::: .::...::::: ::: ::::::::.:: CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::..:::::::.::::::::::.:::.::.. ::.:. ::::::::::: CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::.::: : ::::::: ::::::::::::::: ::::::::::::::::::::: : : CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.. ::::. CCDS65 LQERLRRKE >>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa) initn: 973 init1: 958 opt: 958 Z-score: 1235.2 bits: 235.2 E(32554): 1.8e-62 Smith-Waterman score: 958; 76.7% identity (90.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR :: :.::::..::: :: ::::::::.:::: :::.:.:::::.:::: ::: :::.: CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::. :::::::.::: ::::.:.::::::...::.:: ::::::::::: CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN :::.:: : :::::: : ::::.:::.:::::: :::::::::::::::::::.:.::: CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 130 140 150 160 170 180 pF1KE3 LKKGLRRKD :.. ::::. CCDS65 LQERLRRKE 189 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:54:04 2016 done: Sun Nov 6 04:54:04 2016 Total Scan time: 1.720 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]