FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2433, 1304 aa 1>>>pF1KE2433 1304 - 1304 aa - 1304 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.4142+/-0.000551; mu= -1.0647+/- 0.034 mean_var=287.8638+/-58.239, 0's: 0 Z-trim(115.6): 23 B-trim: 44 in 2/54 Lambda= 0.075593 statistics sampled from 26162 (26181) to 26162 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.307), width: 16 Scan time: 15.840 The best scores are: opt bits E(85289) NP_036565 (OMIM: 605590,614286) splicing factor 3B (1304) 8685 962.4 0 NP_001295753 (OMIM: 605590,614286) splicing factor ( 154) 929 115.9 2.3e-25 NP_001005526 (OMIM: 605590,614286) splicing factor ( 144) 921 115.0 3.9e-25 >>NP_036565 (OMIM: 605590,614286) splicing factor 3B sub (1304 aa) initn: 8685 init1: 8685 opt: 8685 Z-score: 5134.7 bits: 962.4 E(85289): 0 Smith-Waterman score: 8685; 100.0% identity (100.0% similar) in 1304 aa overlap (1-1304:1-1304) 10 20 30 40 50 60 pF1KE2 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE2 IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE2 DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE2 ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF 850 860 870 880 890 900 910 920 930 940 950 960 pF1KE2 QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KE2 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KE2 TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KE2 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KE2 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 pF1KE2 GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 pF1KE2 VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL :::::::::::::::::::::::::::::::::::::::::::: NP_036 VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1270 1280 1290 1300 >>NP_001295753 (OMIM: 605590,614286) splicing factor 3B (154 aa) initn: 987 init1: 929 opt: 929 Z-score: 576.5 bits: 115.9 E(85289): 2.3e-25 Smith-Waterman score: 929; 97.9% identity (99.3% similar) in 143 aa overlap (1-143:1-143) 10 20 30 40 50 60 pF1KE2 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE :::::::::::::::::::.. : NP_001 KHRRTMIISPERLDPFADGNSFPLFYKYSEIYLY 130 140 150 >>NP_001005526 (OMIM: 605590,614286) splicing factor 3B (144 aa) initn: 921 init1: 921 opt: 921 Z-score: 572.2 bits: 115.0 E(85289): 3.9e-25 Smith-Waterman score: 921; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139) 10 20 30 40 50 60 pF1KE2 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE ::::::::::::::::::: NP_001 KHRRTMIISPERLDPFADGFYSAA 130 140 1304 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 20:14:04 2016 done: Mon Nov 7 20:14:07 2016 Total Scan time: 15.840 Total Display time: 0.080 Function used was FASTA [36.3.4 Apr, 2011]