FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5648, 485 aa 1>>>pF1KE5648 485 - 485 aa - 485 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2755+/-0.000354; mu= 18.2319+/- 0.022 mean_var=68.1223+/-13.095, 0's: 0 Z-trim(114.6): 16 B-trim: 0 in 0/54 Lambda= 0.155392 statistics sampled from 24533 (24545) to 24533 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.288), width: 16 Scan time: 6.930 The best scores are: opt bits E(85289) NP_009146 (OMIM: 604983,610131) DNA polymerase sub ( 485) 3295 747.8 1.6e-215 XP_016879561 (OMIM: 604983,610131) PREDICTED: DNA ( 398) 2751 625.8 7e-179 XP_006721714 (OMIM: 604983,610131) PREDICTED: DNA ( 330) 2249 513.2 4.6e-145 >>NP_009146 (OMIM: 604983,610131) DNA polymerase subunit (485 aa) initn: 3295 init1: 3295 opt: 3295 Z-score: 3990.3 bits: 747.8 E(85289): 1.6e-215 Smith-Waterman score: 3295; 99.8% identity (100.0% similar) in 485 aa overlap (1-485:1-485) 10 20 30 40 50 60 pF1KE5 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 FTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPAYLET :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: NP_009 FTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLET 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 MQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 MQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYIS 430 440 450 460 470 480 pF1KE5 SAKNV ::::: NP_009 SAKNV >>XP_016879561 (OMIM: 604983,610131) PREDICTED: DNA poly (398 aa) initn: 2751 init1: 2751 opt: 2751 Z-score: 3332.4 bits: 625.8 E(85289): 7e-179 Smith-Waterman score: 2751; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398) 10 20 30 40 50 60 pF1KE5 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 FTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPAYLET :::::::::::::::::::::::::::::::::::::: XP_016 FTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQV 370 380 390 430 440 450 460 470 480 pF1KE5 MQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYIS >>XP_006721714 (OMIM: 604983,610131) PREDICTED: DNA poly (330 aa) initn: 2249 init1: 2249 opt: 2249 Z-score: 2725.4 bits: 513.2 E(85289): 4.6e-145 Smith-Waterman score: 2249; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323) 10 20 30 40 50 60 pF1KE5 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS ::::::::::::::::::::::: XP_006 ETLWNLGDHELLHMYPGNVSKLHMQRHSPT 310 320 330 485 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:32:12 2016 done: Tue Nov 8 05:32:13 2016 Total Scan time: 6.930 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]