FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9939, 527 aa 1>>>pF1KB9939 527 - 527 aa - 527 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4673+/-0.000367; mu= 17.5530+/- 0.023 mean_var=72.0589+/-14.848, 0's: 0 Z-trim(113.7): 29 B-trim: 41 in 1/54 Lambda= 0.151088 statistics sampled from 23088 (23106) to 23088 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.271), width: 16 Scan time: 8.700 The best scores are: opt bits E(85289) NP_002683 (OMIM: 602670) DNA polymerase epsilon su ( 527) 3542 781.6 0 XP_016876863 (OMIM: 602670) PREDICTED: DNA polymer ( 546) 3503 773.1 0 NP_001184260 (OMIM: 602670) DNA polymerase epsilon ( 502) 3352 740.1 3.5e-213 XP_016876864 (OMIM: 602670) PREDICTED: DNA polymer ( 450) 3056 675.6 8.5e-194 XP_011535145 (OMIM: 602670) PREDICTED: DNA polymer ( 469) 3017 667.1 3.2e-191 NP_001184259 (OMIM: 602670) DNA polymerase epsilon ( 501) 2873 635.7 9.5e-182 XP_011535144 (OMIM: 602670) PREDICTED: DNA polymer ( 520) 2834 627.2 3.6e-179 XP_011535146 (OMIM: 602670) PREDICTED: DNA polymer ( 265) 1645 367.9 2.1e-101 >>NP_002683 (OMIM: 602670) DNA polymerase epsilon subuni (527 aa) initn: 3542 init1: 3542 opt: 3542 Z-score: 4171.7 bits: 781.6 E(85289): 0 Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527) 10 20 30 40 50 60 pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI 430 440 450 460 470 480 490 500 510 520 pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF ::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF 490 500 510 520 >>XP_016876863 (OMIM: 602670) PREDICTED: DNA polymerase (546 aa) initn: 3503 init1: 3503 opt: 3503 Z-score: 4125.5 bits: 773.1 E(85289): 0 Smith-Waterman score: 3503; 100.0% identity (100.0% similar) in 521 aa overlap (1-521:1-521) 10 20 30 40 50 60 pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI 430 440 450 460 470 480 490 500 510 520 pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF ::::::::::::::::::::::::::::::::::::::::: XP_016 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDRSRTVFWGKSQASCGGELV 490 500 510 520 530 540 XP_016 LLQANS >>NP_001184260 (OMIM: 602670) DNA polymerase epsilon sub (502 aa) initn: 3352 init1: 3352 opt: 3352 Z-score: 3948.2 bits: 740.1 E(85289): 3.5e-213 Smith-Waterman score: 3352; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:1-499) 10 20 30 40 50 60 pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI 430 440 450 460 470 480 490 500 510 520 pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF ::::::::::::::::::: NP_001 ADKYDPFTTTNTECLCINPVRM 490 500 >>XP_016876864 (OMIM: 602670) PREDICTED: DNA polymerase (450 aa) initn: 3056 init1: 3056 opt: 3056 Z-score: 3600.2 bits: 675.6 E(85289): 8.5e-194 Smith-Waterman score: 3056; 100.0% identity (100.0% similar) in 446 aa overlap (82-527:5-450) 60 70 80 90 100 110 pF1KB9 VEKQPLSSNMIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLM :::::::::::::::::::::::::::::: XP_016 MKLCIEHVFNIIGAFDIPRFVYNSERKKFLPLLM 10 20 30 120 130 140 150 160 170 pF1KB9 TNHPAPNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TNHPAPNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETL 40 50 60 70 80 90 180 190 200 210 220 230 pF1KB9 LGSTTKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LGSTTKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFE 100 110 120 130 140 150 240 250 260 270 280 290 pF1KB9 DQVFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DQVFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLS 160 170 180 190 200 210 300 310 320 330 340 350 pF1KB9 DVWLDQVEVLEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DVWLDQVEVLEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICE 220 230 240 250 260 270 360 370 380 390 400 410 pF1KB9 YPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQE 280 290 300 310 320 330 420 430 440 450 460 470 pF1KB9 ITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRV 340 350 360 370 380 390 480 490 500 510 520 pF1KB9 YPVPDLLVIADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YPVPDLLVIADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF 400 410 420 430 440 450 >>XP_011535145 (OMIM: 602670) PREDICTED: DNA polymerase (469 aa) initn: 3017 init1: 3017 opt: 3017 Z-score: 3554.0 bits: 667.1 E(85289): 3.2e-191 Smith-Waterman score: 3017; 100.0% identity (100.0% similar) in 440 aa overlap (82-521:5-444) 60 70 80 90 100 110 pF1KB9 VEKQPLSSNMIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLM :::::::::::::::::::::::::::::: XP_011 MKLCIEHVFNIIGAFDIPRFVYNSERKKFLPLLM 10 20 30 120 130 140 150 160 170 pF1KB9 TNHPAPNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TNHPAPNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETL 40 50 60 70 80 90 180 190 200 210 220 230 pF1KB9 LGSTTKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LGSTTKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFE 100 110 120 130 140 150 240 250 260 270 280 290 pF1KB9 DQVFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DQVFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLS 160 170 180 190 200 210 300 310 320 330 340 350 pF1KB9 DVWLDQVEVLEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DVWLDQVEVLEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICE 220 230 240 250 260 270 360 370 380 390 400 410 pF1KB9 YPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQE 280 290 300 310 320 330 420 430 440 450 460 470 pF1KB9 ITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRV 340 350 360 370 380 390 480 490 500 510 520 pF1KB9 YPVPDLLVIADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF :::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YPVPDLLVIADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDRSRTVFWGKS 400 410 420 430 440 450 XP_011 QASCGGELVLLQANS 460 >>NP_001184259 (OMIM: 602670) DNA polymerase epsilon sub (501 aa) initn: 3350 init1: 2873 opt: 2873 Z-score: 3383.9 bits: 635.7 E(85289): 9.5e-182 Smith-Waterman score: 3302; 95.1% identity (95.1% similar) in 527 aa overlap (1-527:1-501) 10 20 30 40 50 60 pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF :::::::::::::::::::::: :::::::::::: NP_001 MIERSVVEAAVQECSQSVDETI--------------------------LLMTNHPAPNLF 70 80 90 130 140 150 160 170 180 pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD 100 110 120 130 140 150 190 200 210 220 230 240 pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF 160 170 180 190 200 210 250 260 270 280 290 300 pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV 220 230 240 250 260 270 310 320 330 340 350 360 pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR 280 290 300 310 320 330 370 380 390 400 410 420 pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV 340 350 360 370 380 390 430 440 450 460 470 480 pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI 400 410 420 430 440 450 490 500 510 520 pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF 460 470 480 490 500 >>XP_011535144 (OMIM: 602670) PREDICTED: DNA polymerase (520 aa) initn: 3311 init1: 2834 opt: 2834 Z-score: 3337.8 bits: 627.2 E(85289): 3.6e-179 Smith-Waterman score: 3263; 95.0% identity (95.0% similar) in 521 aa overlap (1-521:1-495) 10 20 30 40 50 60 pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF :::::::::::::::::::::: :::::::::::: XP_011 MIERSVVEAAVQECSQSVDETI--------------------------LLMTNHPAPNLF 70 80 90 130 140 150 160 170 180 pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD 100 110 120 130 140 150 190 200 210 220 230 240 pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF 160 170 180 190 200 210 250 260 270 280 290 300 pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV 220 230 240 250 260 270 310 320 330 340 350 360 pF1KB9 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSR 280 290 300 310 320 330 370 380 390 400 410 420 pF1KB9 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLV 340 350 360 370 380 390 430 440 450 460 470 480 pF1KB9 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVI 400 410 420 430 440 450 490 500 510 520 pF1KB9 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF ::::::::::::::::::::::::::::::::::::::::: XP_011 ADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDRSRTVFWGKSQASCGGELV 460 470 480 490 500 510 XP_011 LLQANS 520 >>XP_011535146 (OMIM: 602670) PREDICTED: DNA polymerase (265 aa) initn: 1641 init1: 1641 opt: 1645 Z-score: 1941.4 bits: 367.9 E(85289): 2.1e-101 Smith-Waterman score: 1645; 96.9% identity (98.9% similar) in 261 aa overlap (1-261:1-261) 10 20 30 40 50 60 pF1KB9 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 GFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV :::::::::::: . .. :.. XP_011 GFPPTEPSSTTRLFTSTSNLLYSVW 250 260 527 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:23:31 2016 done: Sun Nov 6 12:23:33 2016 Total Scan time: 8.700 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]