FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2520, 591 aa
  1>>>pF1KE2520 591 - 591 aa - 591 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 16.3230+/-0.0013; mu= -25.4535+/- 0.080
 mean_var=858.3240+/-175.880, 0's: 0 Z-trim(117.5): 49  B-trim: 66 in 1/55
 Lambda= 0.043777
 statistics sampled from 18221 (18257) to 18221 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.561), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(32554)
CCDS31041.1 ENAH gene_id:55740|Hs108|chr1          ( 591) 3962 265.3 1.5e-70
CCDS31040.1 ENAH gene_id:55740|Hs108|chr1          ( 570) 3496 235.9 1.1e-61


>>CCDS31041.1 ENAH gene_id:55740|Hs108|chr1               (591 aa)
 initn: 3962 init1: 3962 opt: 3962  Z-score: 1380.0  bits: 265.3 E(32554): 1.5e-70
Smith-Waterman score: 3962; 100.0% identity (100.0% similar) in 591 aa overlap (1-591:1-591)

               10        20        30        40        50        60
pF1KE2 MSEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQETGPTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQETGPTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 PRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKELERERLERERMERERLERERLERER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKELERERLERERMERERLERERLERER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LERERLEQEQLERERQERERQERLERQERLERQERLERQERLDRERQERQERERLERLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LERERLEQEQLERERQERERQERLERQERLERQERLERQERLDRERQERQERERLERLER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ERQERERQEQLEREQLEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ERQERERQEQLEREQLEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAET
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 PSQQGIVLGPLAPPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPPPLPNQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSQQGIVLGPLAPPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPPPLPNQV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 PPPPPPPPAPPLPASGFFLASMSEDNRPLTGLAAAIAGAKLRKVSRMEDTSFPSGGNAIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PPPPPPPPAPPLPASGFFLASMSEDNRPLTGLAAAIAGAKLRKVSRMEDTSFPSGGNAIG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 VNSASSKTDTGRGNGPLPLGGSGLMEEMSALLARRRRIAEKGSTIETEQKEDKGEDSEPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VNSASSKTDTGRGNGPLPLGGSGLMEEMSALLARRRRIAEKGSTIETEQKEDKGEDSEPV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 TSKASSTSTPEPTRKPWERTNTMNGSKSPVISRRDSPRKNQIVFDNRSYDSLHRPKSTPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TSKASSTSTPEPTRKPWERTNTMNGSKSPVISRRDSPRKNQIVFDNRSYDSLHRPKSTPL
              490       500       510       520       530       540

              550       560       570       580       590 
pF1KE2 SQPSANGVQTEGLDYDRLKQDILDEMRKELTKLKEELIDAIRQELSKSNTA
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SQPSANGVQTEGLDYDRLKQDILDEMRKELTKLKEELIDAIRQELSKSNTA
              550       560       570       580       590 

>>CCDS31040.1 ENAH gene_id:55740|Hs108|chr1               (570 aa)
 initn: 3940 init1: 3462 opt: 3496  Z-score: 1221.1  bits: 235.9 E(32554): 1.1e-61
Smith-Waterman score: 3765; 96.4% identity (96.4% similar) in 591 aa overlap (1-591:1-570)

               10        20        30        40        50        60
pF1KE2 MSEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQETGPTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQETGPTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 PRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKELERERLERERMERERLERERLERER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKELERERLERERMERERLERERLERER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LERERLEQEQLERERQERERQERLERQERLERQERLERQERLDRERQERQERERLERLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LERERLEQEQLERERQERERQERLERQERLERQERLERQERLDRERQERQERERLERLER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ERQERERQEQLEREQLEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ERQERERQEQLEREQLEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAET
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 PSQQGIVLGPLAPPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPPPLPNQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSQQGIVLGPLAPPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGPPPPPPPPPLPNQV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 PPPPPPPPAPPLPASGFFLASMSEDNRPLTGLAAAIAGAKLRKVSRMEDTSFPSGGNAIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PPPPPPPPAPPLPASGFFLASMSEDNRPLTGLAAAIAGAKLRKVSRMEDTSFPSGGNAIG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 VNSASSKTDTGRGNGPLPLGGSGLMEEMSALLARRRRIAEKGSTIETEQKEDKGEDSEPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VNSASSKTDTGRGNGPLPLGGSGLMEEMSALLARRRRIAEKGSTIETEQKEDKGEDSEPV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 TSKASSTSTPEPTRKPWERTNTMNGSKSPVISRRDSPRKNQIVFDNRSYDSLHRPKSTPL
       :::::::::::::::::::::::::::::::::                     ::::::
CCDS31 TSKASSTSTPEPTRKPWERTNTMNGSKSPVISR---------------------PKSTPL
              490       500       510                              

              550       560       570       580       590 
pF1KE2 SQPSANGVQTEGLDYDRLKQDILDEMRKELTKLKEELIDAIRQELSKSNTA
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SQPSANGVQTEGLDYDRLKQDILDEMRKELTKLKEELIDAIRQELSKSNTA
     520       530       540       550       560       570




591 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:12:02 2016 done: Tue Nov  8 03:12:03 2016
 Total Scan time:  3.700 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]