Result of FASTA (ccds) for pFN21AB5728
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5728, 731 aa
  1>>>pF1KB5728 731 - 731 aa - 731 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4125+/-0.00106; mu= 8.7353+/- 0.065
 mean_var=284.2216+/-62.276, 0's: 0 Z-trim(112.5): 77  B-trim: 811 in 1/52
 Lambda= 0.076076
 statistics sampled from 13185 (13256) to 13185 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.407), width:  16
 Scan time:  4.520

The best scores are:                                      opt bits E(32554)
CCDS30944.1 RFWD2 gene_id:64326|Hs108|chr1         ( 731) 4864 548.0  2e-155
CCDS44279.1 RFWD2 gene_id:64326|Hs108|chr1         ( 707) 2955 338.4 2.3e-92


>>CCDS30944.1 RFWD2 gene_id:64326|Hs108|chr1              (731 aa)
 initn: 4864 init1: 4864 opt: 4864  Z-score: 2904.0  bits: 548.0 E(32554): 2e-155
Smith-Waterman score: 4864; 100.0% identity (100.0% similar) in 731 aa overlap (1-731:1-731)

               10        20        30        40        50        60
pF1KB5 MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAVSAAALVSGGVAQAAGSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAVSAAALVSGGVAQAAGSGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LGGPVRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGGSSSSLGSGSRKRPLLAPLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LGGPVRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGGSSSSLGSGSRKRPLLAPLC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDWLGTDQDNLDLANVNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDWLGTDQDNLDLANVNL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 MLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 GLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 TAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 SSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 YHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 YHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 WSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 WSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 AVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 NNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAAN
              670       680       690       700       710       720

              730 
pF1KB5 SQGTIKVLELV
       :::::::::::
CCDS30 SQGTIKVLELV
              730 

>>CCDS44279.1 RFWD2 gene_id:64326|Hs108|chr1              (707 aa)
 initn: 4303 init1: 2911 opt: 2955  Z-score: 1771.9  bits: 338.4 E(32554): 2.3e-92
Smith-Waterman score: 4658; 96.7% identity (96.7% similar) in 731 aa overlap (1-731:1-707)

               10        20        30        40        50        60
pF1KB5 MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAVSAAALVSGGVAQAAGSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAVSAAALVSGGVAQAAGSGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LGGPVRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGGSSSSLGSGSRKRPLLAPLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LGGPVRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGGSSSSLGSGSRKRPLLAPLC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDWLGTDQDNLDLANVNL
       ::::::::::::::::::::::::::::::    ::::::::::::::::::::::::::
CCDS44 DHLYPNFLVNELILKQKQRFEEKRFKLDHS----NGHRWQIFQDWLGTDQDNLDLANVNL
              190       200       210           220       230      

              250       260       270       280       290       300
pF1KB5 MLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMS
       ::::::::::::::::::::::::::::::::::::                    ::::
CCDS44 MLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKR--------------------EEMS
        240       250       260       270                          

              310       320       330       340       350       360
pF1KB5 GLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRL
        280       290       300       310       320       330      

              370       380       390       400       410       420
pF1KB5 TAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNG
        340       350       360       370       380       390      

              430       440       450       460       470       480
pF1KB5 SSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSS
        400       410       420       430       440       450      

              490       500       510       520       530       540
pF1KB5 YHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKL
        460       470       480       490       500       510      

              550       560       570       580       590       600
pF1KB5 WSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRK
        520       530       540       550       560       570      

              610       620       630       640       650       660
pF1KB5 AVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSE
        580       590       600       610       620       630      

              670       680       690       700       710       720
pF1KB5 NNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAAN
        640       650       660       670       680       690      

              730 
pF1KB5 SQGTIKVLELV
       :::::::::::
CCDS44 SQGTIKVLELV
        700       




731 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:52:37 2016 done: Sun Nov  6 05:52:38 2016
 Total Scan time:  4.520 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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