FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5728, 731 aa 1>>>pF1KB5728 731 - 731 aa - 731 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.4125+/-0.00106; mu= 8.7353+/- 0.065 mean_var=284.2216+/-62.276, 0's: 0 Z-trim(112.5): 77 B-trim: 811 in 1/52 Lambda= 0.076076 statistics sampled from 13185 (13256) to 13185 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.407), width: 16 Scan time: 4.520 The best scores are: opt bits E(32554) CCDS30944.1 RFWD2 gene_id:64326|Hs108|chr1 ( 731) 4864 548.0 2e-155 CCDS44279.1 RFWD2 gene_id:64326|Hs108|chr1 ( 707) 2955 338.4 2.3e-92 >>CCDS30944.1 RFWD2 gene_id:64326|Hs108|chr1 (731 aa) initn: 4864 init1: 4864 opt: 4864 Z-score: 2904.0 bits: 548.0 E(32554): 2e-155 Smith-Waterman score: 4864; 100.0% identity (100.0% similar) in 731 aa overlap (1-731:1-731) 10 20 30 40 50 60 pF1KB5 MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAVSAAALVSGGVAQAAGSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAVSAAALVSGGVAQAAGSGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 LGGPVRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGGSSSSLGSGSRKRPLLAPLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 LGGPVRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGGSSSSLGSGSRKRPLLAPLC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 NGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 NGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 DHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDWLGTDQDNLDLANVNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 DHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDWLGTDQDNLDLANVNL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 MLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 MLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 GLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 GLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 TAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 TAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 SSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 SSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB5 YHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 YHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB5 WSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 WSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRK 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB5 AVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 AVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSE 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB5 NNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 NNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAAN 670 680 690 700 710 720 730 pF1KB5 SQGTIKVLELV ::::::::::: CCDS30 SQGTIKVLELV 730 >>CCDS44279.1 RFWD2 gene_id:64326|Hs108|chr1 (707 aa) initn: 4303 init1: 2911 opt: 2955 Z-score: 1771.9 bits: 338.4 E(32554): 2.3e-92 Smith-Waterman score: 4658; 96.7% identity (96.7% similar) in 731 aa overlap (1-731:1-707) 10 20 30 40 50 60 pF1KB5 MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAVSAAALVSGGVAQAAGSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAVSAAALVSGGVAQAAGSGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 LGGPVRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGGSSSSLGSGSRKRPLLAPLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 LGGPVRPVLVAPAVSGSGGGAVSTGLSRHSCAARPSAGVGGSSSSLGSGSRKRPLLAPLC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 NGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 NGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 DHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDWLGTDQDNLDLANVNL :::::::::::::::::::::::::::::: :::::::::::::::::::::::::: CCDS44 DHLYPNFLVNELILKQKQRFEEKRFKLDHS----NGHRWQIFQDWLGTDQDNLDLANVNL 190 200 210 220 230 250 260 270 280 290 300 pF1KB5 MLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMS :::::::::::::::::::::::::::::::::::: :::: CCDS44 MLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKR--------------------EEMS 240 250 260 270 310 320 330 340 350 360 pF1KB5 GLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 GLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRL 280 290 300 310 320 330 370 380 390 400 410 420 pF1KB5 TAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 TAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNG 340 350 360 370 380 390 430 440 450 460 470 480 pF1KB5 SSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 SSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSS 400 410 420 430 440 450 490 500 510 520 530 540 pF1KB5 YHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 YHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKL 460 470 480 490 500 510 550 560 570 580 590 600 pF1KB5 WSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 WSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRK 520 530 540 550 560 570 610 620 630 640 650 660 pF1KB5 AVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 AVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSE 580 590 600 610 620 630 670 680 690 700 710 720 pF1KB5 NNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 NNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAAN 640 650 660 670 680 690 730 pF1KB5 SQGTIKVLELV ::::::::::: CCDS44 SQGTIKVLELV 700 731 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:52:37 2016 done: Sun Nov 6 05:52:38 2016 Total Scan time: 4.520 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]