FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6174, 91 aa 1>>>pF1KE6174 91 - 91 aa - 91 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4220+/-0.000239; mu= 4.7248+/- 0.015 mean_var=96.4282+/-18.912, 0's: 0 Z-trim(123.4): 3 B-trim: 43 in 1/55 Lambda= 0.130609 statistics sampled from 43281 (43284) to 43281 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.507), width: 16 Scan time: 3.350 The best scores are: opt bits E(85289) NP_005995 (OMIM: 613844) cytochrome b-c1 complex s ( 91) 614 124.2 2.9e-29 NP_001284495 (OMIM: 613844) cytochrome b-c1 comple ( 82) 444 92.1 1.2e-19 NP_001284494 (OMIM: 613844) cytochrome b-c1 comple ( 85) 443 91.9 1.4e-19 >>NP_005995 (OMIM: 613844) cytochrome b-c1 complex subun (91 aa) initn: 614 init1: 614 opt: 614 Z-score: 646.2 bits: 124.2 E(85289): 2.9e-29 Smith-Waterman score: 614; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91) 10 20 30 40 50 60 pF1KE6 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSR 10 20 30 40 50 60 70 80 90 pF1KE6 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK ::::::::::::::::::::::::::::::: NP_005 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK 70 80 90 >>NP_001284495 (OMIM: 613844) cytochrome b-c1 complex su (82 aa) initn: 550 init1: 443 opt: 444 Z-score: 473.8 bits: 92.1 E(85289): 1.2e-19 Smith-Waterman score: 534; 90.1% identity (90.1% similar) in 91 aa overlap (1-91:1-82) 10 20 30 40 50 60 pF1KE6 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSR :::::::::::::::::: ::::::::::::::::::::::::::::::::: NP_001 MGLEDEQKMLTESGDPEE---------DPLTTVREQCEQLEKCVKARERLELCDERVSSR 10 20 30 40 50 70 80 90 pF1KE6 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK ::::::::::::::::::::::::::::::: NP_001 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK 60 70 80 >>NP_001284494 (OMIM: 613844) cytochrome b-c1 complex su (85 aa) initn: 443 init1: 443 opt: 443 Z-score: 472.6 bits: 91.9 E(85289): 1.4e-19 Smith-Waterman score: 443; 100.0% identity (100.0% similar) in 64 aa overlap (28-91:22-85) 10 20 30 40 50 60 pF1KE6 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSR ::::::::::::::::::::::::::::::::: NP_001 MGDRILPFLAAVWLCQLAFCTDPLTTVREQCEQLEKCVKARERLELCDERVSSR 10 20 30 40 50 70 80 90 pF1KE6 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK ::::::::::::::::::::::::::::::: NP_001 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK 60 70 80 91 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:04:51 2016 done: Tue Nov 8 10:04:51 2016 Total Scan time: 3.350 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]