FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6535, 70 aa 1>>>pF1KE6535 70 - 70 aa - 70 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3371+/-0.000278; mu= 10.8672+/- 0.017 mean_var=43.1063+/- 8.878, 0's: 0 Z-trim(117.9): 8 B-trim: 0 in 0/52 Lambda= 0.195346 statistics sampled from 30327 (30335) to 30327 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.356), width: 16 Scan time: 3.460 The best scores are: opt bits E(85289) NP_004532 (OMIM: 252010,300078) NADH dehydrogenase ( 70) 486 143.3 3.1e-35 >>NP_004532 (OMIM: 252010,300078) NADH dehydrogenase [ub (70 aa) initn: 486 init1: 486 opt: 486 Z-score: 753.7 bits: 143.3 E(85289): 3.1e-35 Smith-Waterman score: 486; 100.0% identity (100.0% similar) in 70 aa overlap (1-70:1-70) 10 20 30 40 50 60 pF1KE6 MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY 10 20 30 40 50 60 70 pF1KE6 YVSKGLENID :::::::::: NP_004 YVSKGLENID 70 70 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:11:44 2016 done: Tue Nov 8 14:11:45 2016 Total Scan time: 3.460 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]