Result of FASTA (omim) for pFN21AE2273
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2273, 559 aa
  1>>>pF1KE2273 559 - 559 aa - 559 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.8781+/-0.000457; mu= -16.3702+/- 0.029
 mean_var=406.9852+/-84.223, 0's: 0 Z-trim(120.8): 25  B-trim: 0 in 0/57
 Lambda= 0.063575
 statistics sampled from 36424 (36453) to 36424 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.427), width:  16
 Scan time: 10.140

The best scores are:                                      opt bits E(85289)
XP_016883966 (OMIM: 601245) PREDICTED: chromatin a ( 559) 3734 356.8   1e-97
XP_016883967 (OMIM: 601245) PREDICTED: chromatin a ( 559) 3734 356.8   1e-97
NP_005432 (OMIM: 601245) chromatin assembly factor ( 559) 3734 356.8   1e-97
XP_011528057 (OMIM: 601245) PREDICTED: chromatin a ( 372) 2441 238.1 3.7e-62


>>XP_016883966 (OMIM: 601245) PREDICTED: chromatin assem  (559 aa)
 initn: 3734 init1: 3734 opt: 3734  Z-score: 1875.3  bits: 356.8 E(85289): 1e-97
Smith-Waterman score: 3734; 99.8% identity (99.8% similar) in 559 aa overlap (1-559:1-559)

               10        20        30        40        50        60
pF1KE2 MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGKAIVEFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGKAIVEFLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQIAFQDEDEAQLNKENWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQIAFQDEDEAQLNKENWT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VVKTLRGHLEDVYDICWATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVKTLRGHLEDVYDICWATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 PLGQYVATLSCDRVLRVYSIQKKRVAFNVSKMLSGIGAEGEARSYRMFHDDSMKSFFRRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLGQYVATLSCDRVLRVYSIQKKRVAFNVSKMLSGIGAEGEARSYRMFHDDSMKSFFRRL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 SFTPDGSLLLTPAGCVESGENVMNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFTPDGSLLLTPAGCVESGENVMNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 RPVVETGVELMSLPYRLVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPVVETGVELMSLPYRLVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LAISSTDGYCSFVTFEKDELGIPLKEKPVLNMRTPDTAKKTKSQTHRGSSPGPRLVEGTP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
XP_016 LAISSTDGYCSFVTFEKDELGIPLKEKPVLNMRTPDTAKKTKSQTHRGSSPGPRPVEGTP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 ASRTQDPSSPGTTPPQARQAPAPTVIRDPPSITPAVKSPLPGPSEEKTLQPSSQNTKAHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASRTQDPSSPGTTPPQARQAPAPTVIRDPPSITPAVKSPLPGPSEEKTLQPSSQNTKAHP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 SRRVTLNTLQAWSKTTPRRINLTPLKTDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRRVTLNTLQAWSKTTPRRINLTPLKTDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPP
              490       500       510       520       530       540

              550         
pF1KE2 ELKRPRLDENKGGTESLDP
       :::::::::::::::::::
XP_016 ELKRPRLDENKGGTESLDP
              550         

>>XP_016883967 (OMIM: 601245) PREDICTED: chromatin assem  (559 aa)
 initn: 3734 init1: 3734 opt: 3734  Z-score: 1875.3  bits: 356.8 E(85289): 1e-97
Smith-Waterman score: 3734; 99.8% identity (99.8% similar) in 559 aa overlap (1-559:1-559)

               10        20        30        40        50        60
pF1KE2 MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGKAIVEFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGKAIVEFLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQIAFQDEDEAQLNKENWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQIAFQDEDEAQLNKENWT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VVKTLRGHLEDVYDICWATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVKTLRGHLEDVYDICWATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 PLGQYVATLSCDRVLRVYSIQKKRVAFNVSKMLSGIGAEGEARSYRMFHDDSMKSFFRRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLGQYVATLSCDRVLRVYSIQKKRVAFNVSKMLSGIGAEGEARSYRMFHDDSMKSFFRRL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 SFTPDGSLLLTPAGCVESGENVMNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFTPDGSLLLTPAGCVESGENVMNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 RPVVETGVELMSLPYRLVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPVVETGVELMSLPYRLVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LAISSTDGYCSFVTFEKDELGIPLKEKPVLNMRTPDTAKKTKSQTHRGSSPGPRLVEGTP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
XP_016 LAISSTDGYCSFVTFEKDELGIPLKEKPVLNMRTPDTAKKTKSQTHRGSSPGPRPVEGTP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 ASRTQDPSSPGTTPPQARQAPAPTVIRDPPSITPAVKSPLPGPSEEKTLQPSSQNTKAHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASRTQDPSSPGTTPPQARQAPAPTVIRDPPSITPAVKSPLPGPSEEKTLQPSSQNTKAHP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 SRRVTLNTLQAWSKTTPRRINLTPLKTDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRRVTLNTLQAWSKTTPRRINLTPLKTDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPP
              490       500       510       520       530       540

              550         
pF1KE2 ELKRPRLDENKGGTESLDP
       :::::::::::::::::::
XP_016 ELKRPRLDENKGGTESLDP
              550         

>>NP_005432 (OMIM: 601245) chromatin assembly factor 1 s  (559 aa)
 initn: 3734 init1: 3734 opt: 3734  Z-score: 1875.3  bits: 356.8 E(85289): 1e-97
Smith-Waterman score: 3734; 99.8% identity (99.8% similar) in 559 aa overlap (1-559:1-559)

               10        20        30        40        50        60
pF1KE2 MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGKAIVEFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGKAIVEFLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQIAFQDEDEAQLNKENWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQIAFQDEDEAQLNKENWT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VVKTLRGHLEDVYDICWATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VVKTLRGHLEDVYDICWATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 PLGQYVATLSCDRVLRVYSIQKKRVAFNVSKMLSGIGAEGEARSYRMFHDDSMKSFFRRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PLGQYVATLSCDRVLRVYSIQKKRVAFNVSKMLSGIGAEGEARSYRMFHDDSMKSFFRRL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 SFTPDGSLLLTPAGCVESGENVMNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SFTPDGSLLLTPAGCVESGENVMNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 RPVVETGVELMSLPYRLVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RPVVETGVELMSLPYRLVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LAISSTDGYCSFVTFEKDELGIPLKEKPVLNMRTPDTAKKTKSQTHRGSSPGPRLVEGTP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_005 LAISSTDGYCSFVTFEKDELGIPLKEKPVLNMRTPDTAKKTKSQTHRGSSPGPRPVEGTP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 ASRTQDPSSPGTTPPQARQAPAPTVIRDPPSITPAVKSPLPGPSEEKTLQPSSQNTKAHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ASRTQDPSSPGTTPPQARQAPAPTVIRDPPSITPAVKSPLPGPSEEKTLQPSSQNTKAHP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 SRRVTLNTLQAWSKTTPRRINLTPLKTDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SRRVTLNTLQAWSKTTPRRINLTPLKTDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPP
              490       500       510       520       530       540

              550         
pF1KE2 ELKRPRLDENKGGTESLDP
       :::::::::::::::::::
NP_005 ELKRPRLDENKGGTESLDP
              550         

>>XP_011528057 (OMIM: 601245) PREDICTED: chromatin assem  (372 aa)
 initn: 2437 init1: 2437 opt: 2441  Z-score: 1236.9  bits: 238.1 E(85289): 3.7e-62
Smith-Waterman score: 2441; 98.7% identity (99.5% similar) in 372 aa overlap (189-559:1-372)

      160       170       180       190        200       210       
pF1KE2 SKGQKISIFNEHKSYVQGVTWDPLGQYVATLSCD-RVLRVYSIQKKRVAFNVSKMLSGIG
                                     ..:. :::::::::::::::::::::::::
XP_011                               MGCQQRVLRVYSIQKKRVAFNVSKMLSGIG
                                             10        20        30

       220       230       240       250       260       270       
pF1KE2 AEGEARSYRMFHDDSMKSFFRRLSFTPDGSLLLTPAGCVESGENVMNTTYVFSRKNLKRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEGEARSYRMFHDDSMKSFFRRLSFTPDGSLLLTPAGCVESGENVMNTTYVFSRKNLKRP
               40        50        60        70        80        90

       280       290       300       310       320       330       
pF1KE2 IAHLPCPGKATLAVRCCPVYFELRPVVETGVELMSLPYRLVFAVASEDSVLLYDTQQSFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAHLPCPGKATLAVRCCPVYFELRPVVETGVELMSLPYRLVFAVASEDSVLLYDTQQSFP
              100       110       120       130       140       150

       340       350       360       370       380       390       
pF1KE2 FGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCSFVTFEKDELGIPLKEKPVLNMRTPDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCSFVTFEKDELGIPLKEKPVLNMRTPDT
              160       170       180       190       200       210

       400       410       420       430       440       450       
pF1KE2 AKKTKSQTHRGSSPGPRLVEGTPASRTQDPSSPGTTPPQARQAPAPTVIRDPPSITPAVK
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_011 AKKTKSQTHRGSSPGPRPVEGTPASRTQDPSSPGTTPPQARQAPAPTVIRDPPSITPAVK
              220       230       240       250       260       270

       460       470       480       490       500       510       
pF1KE2 SPLPGPSEEKTLQPSSQNTKAHPSRRVTLNTLQAWSKTTPRRINLTPLKTDTPPSSVPTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPLPGPSEEKTLQPSSQNTKAHPSRRVTLNTLQAWSKTTPRRINLTPLKTDTPPSSVPTS
              280       290       300       310       320       330

       520       530       540       550         
pF1KE2 VISTPSTEEIQSETPGDAQGSPPELKRPRLDENKGGTESLDP
       ::::::::::::::::::::::::::::::::::::::::::
XP_011 VISTPSTEEIQSETPGDAQGSPPELKRPRLDENKGGTESLDP
              340       350       360       370  




559 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:05:24 2016 done: Sun Nov  6 05:05:26 2016
 Total Scan time: 10.140 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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