FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1766, 271 aa 1>>>pF1KE1766 271 - 271 aa - 271 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.0574+/-0.000805; mu= 4.8271+/- 0.049 mean_var=213.7884+/-44.400, 0's: 0 Z-trim(115.6): 13 B-trim: 407 in 1/52 Lambda= 0.087717 statistics sampled from 16124 (16134) to 16124 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.496), width: 16 Scan time: 2.650 The best scores are: opt bits E(32554) CCDS13010.1 PSMF1 gene_id:9491|Hs108|chr20 ( 271) 1920 254.7 5.2e-68 CCDS82589.1 PSMF1 gene_id:9491|Hs108|chr20 ( 263) 1815 241.4 5.1e-64 >>CCDS13010.1 PSMF1 gene_id:9491|Hs108|chr20 (271 aa) initn: 1920 init1: 1920 opt: 1920 Z-score: 1334.4 bits: 254.7 E(32554): 5.2e-68 Smith-Waterman score: 1920; 99.6% identity (99.6% similar) in 271 aa overlap (1-271:1-271) 10 20 30 40 50 60 pF1KE1 MAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYCGLGVGDQPGPNDKKSELLPAGWNN ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: CCDS13 MAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYFGLGVGDQPGPNDKKSELLPAGWNN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 NKDLYVLRYEYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 NKDLYVLRYEYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HRTYKNSEELRSRIVSGIITPIHEQWEKANVSSPHREFPPATAREVDPLRIPPHHPHTSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 HRTYKNSEELRSRIVSGIITPIHEQWEKANVSSPHREFPPATAREVDPLRIPPHHPHTSR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QPPWCDPLGPFVVGGEDLDPFGPRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 QPPWCDPLGPFVVGGEDLDPFGPRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG 190 200 210 220 230 240 250 260 270 pF1KE1 ARFDPFGPIGTSPPGPNPDHLPPPGYDDMYL ::::::::::::::::::::::::::::::: CCDS13 ARFDPFGPIGTSPPGPNPDHLPPPGYDDMYL 250 260 270 >>CCDS82589.1 PSMF1 gene_id:9491|Hs108|chr20 (263 aa) initn: 1815 init1: 1815 opt: 1815 Z-score: 1262.8 bits: 241.4 E(32554): 5.1e-64 Smith-Waterman score: 1815; 99.2% identity (99.2% similar) in 259 aa overlap (1-259:1-259) 10 20 30 40 50 60 pF1KE1 MAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYCGLGVGDQPGPNDKKSELLPAGWNN ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: CCDS82 MAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYFGLGVGDQPGPNDKKSELLPAGWNN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 NKDLYVLRYEYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 NKDLYVLRYEYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HRTYKNSEELRSRIVSGIITPIHEQWEKANVSSPHREFPPATAREVDPLRIPPHHPHTSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 HRTYKNSEELRSRIVSGIITPIHEQWEKANVSSPHREFPPATAREVDPLRIPPHHPHTSR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QPPWCDPLGPFVVGGEDLDPFGPRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 QPPWCDPLGPFVVGGEDLDPFGPRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG 190 200 210 220 230 240 250 260 270 pF1KE1 ARFDPFGPIGTSPPGPNPDHLPPPGYDDMYL :::::::::::::::: :: CCDS82 ARFDPFGPIGTSPPGPRPDRRGQ 250 260 271 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:10:14 2016 done: Sun Nov 6 13:10:15 2016 Total Scan time: 2.650 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]