FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1664, 183 aa 1>>>pF1KE1664 183 - 183 aa - 183 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0387+/-0.000628; mu= 14.3533+/- 0.038 mean_var=59.4182+/-11.574, 0's: 0 Z-trim(110.9): 57 B-trim: 20 in 1/50 Lambda= 0.166385 statistics sampled from 11897 (11955) to 11897 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.367), width: 16 Scan time: 1.930 The best scores are: opt bits E(32554) CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 1241 305.5 1.2e-83 CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2 ( 185) 398 103.1 1e-22 CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2 ( 161) 379 98.5 2.1e-21 CCDS63176.1 UBE2F gene_id:140739|Hs108|chr2 ( 164) 359 93.7 6e-20 CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 327 86.0 1.1e-17 CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 322 84.8 2.6e-17 CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 320 84.3 3.6e-17 CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 318 83.8 5e-17 CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 318 83.8 5.1e-17 CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 308 81.4 2.7e-16 CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 305 80.8 5.2e-16 CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 304 80.5 5.3e-16 CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 303 80.3 6.3e-16 CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 302 80.1 9.4e-16 CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 298 79.1 1.9e-15 CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 294 78.0 2.3e-15 CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 292 77.6 3.2e-15 CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 293 77.9 3.4e-15 CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 290 77.2 6.7e-15 CCDS63177.1 UBE2F gene_id:140739|Hs108|chr2 ( 153) 285 75.9 1.3e-14 CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 283 75.4 1.4e-14 CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 285 76.0 1.7e-14 CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 281 74.9 1.8e-14 CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 279 74.5 3.2e-14 CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 273 73.1 9.3e-14 CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 272 72.8 1.1e-13 CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 270 72.3 1.5e-13 CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 271 72.7 1.8e-13 CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 269 72.1 1.9e-13 CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 268 71.8 2.1e-13 CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 264 71.0 5.1e-13 CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 250 67.5 3.5e-12 CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 250 67.6 5.3e-12 CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 246 66.6 9.3e-12 >>CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 (183 aa) initn: 1241 init1: 1241 opt: 1241 Z-score: 1615.1 bits: 305.5 E(32554): 1.2e-83 Smith-Waterman score: 1241; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183) 10 20 30 40 50 60 pF1KE1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFER 130 140 150 160 170 180 pF1KE1 CLK ::: CCDS12 CLK >>CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2 (185 aa) initn: 336 init1: 296 opt: 398 Z-score: 521.4 bits: 103.1 E(32554): 1e-22 Smith-Waterman score: 398; 38.3% identity (68.3% similar) in 167 aa overlap (12-169:15-181) 10 20 30 40 50 pF1KE1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDPD : ..:. .. :....:. . . :.. :: ::: :: . : ::. CCDS25 MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 DLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNIL : :.:.. ::::.:..::: : .: ..: :::::: : ..:::: :..::..: CCDS25 KLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL 70 80 90 100 110 120 120 130 140 150 160 pF1KE1 RED------WKPVLTINSIIYGLQYLFLEP-NPEDPLNKEAAEVLQNNRRLFEQNVQRSM :: : :. :......::. :: . : .:::: :::: ... :...:. . CCDS25 REHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYI 130 140 150 160 170 180 170 180 pF1KE1 RGGYIGSTYFERCLK . CCDS25 KRYAR >>CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2 (161 aa) initn: 336 init1: 296 opt: 379 Z-score: 497.7 bits: 98.5 E(32554): 2.1e-21 Smith-Waterman score: 379; 42.3% identity (68.6% similar) in 137 aa overlap (40-169:21-157) 10 20 30 40 50 60 pF1KE1 QKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEG : ::: :: . : ::. : :.:.. :::: CCDS63 MVLGAGPASPVSGSPEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEG 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRED------WKPVL .:..::: : .: ..: :::::: : ..:::: :..::..::: : :. CCDS63 YYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTR 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 TINSIIYGLQYLFLEP-NPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL :......::. :: . : .:::: :::: ... :...:. .. CCDS63 TLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 120 130 140 150 160 pF1KE1 K >>CCDS63176.1 UBE2F gene_id:140739|Hs108|chr2 (164 aa) initn: 326 init1: 296 opt: 359 Z-score: 471.6 bits: 93.7 E(32554): 6e-20 Smith-Waterman score: 359; 40.0% identity (68.9% similar) in 135 aa overlap (12-138:15-149) 10 20 30 40 50 pF1KE1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDPD : ..:. .. :....:. . . :.. :: ::: :: . : ::. CCDS63 MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 DLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNIL : :.:.. ::::.:..::: : .: ..: :::::: : ..:::: :..::..: CCDS63 KLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLL 70 80 90 100 110 120 120 130 140 150 160 pF1KE1 RED------WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR :: : :. :......::. :: : CCDS63 REHSIDGTGWAPTRTLKDVVWGLNSLFTEDFRNKVDDYIKRYAR 130 140 150 160 >>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa) initn: 293 init1: 261 opt: 327 Z-score: 430.8 bits: 86.0 E(32554): 1.1e-17 Smith-Waterman score: 327; 34.8% identity (71.9% similar) in 135 aa overlap (33-162:5-136) 10 20 30 40 50 pF1KE1 KLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLL ::.:..:.: . : :. . : ::.. CCDS43 MALKRIHKELNDLARDPPAQCS---AGPVGDDMF 10 20 30 60 70 80 90 100 110 pF1KE1 NFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE ... .. :... :..: : .... :: :::: : .:::::. .:..::.::: CCDS43 HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 40 50 60 70 80 90 120 130 140 150 160 170 pF1KE1 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY .:.:.:::.... .. :. .:::.::: : :.. ...:. ... CCDS43 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 100 110 120 130 140 180 pF1KE1 FERCLK >>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa) initn: 309 init1: 255 opt: 322 Z-score: 424.3 bits: 84.8 E(32554): 2.6e-17 Smith-Waterman score: 322; 34.8% identity (71.1% similar) in 135 aa overlap (33-162:5-136) 10 20 30 40 50 pF1KE1 KLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLL ::::....: . : :. . : :::. CCDS54 MALKRIQKELTDLQRDPPAQCS---AGPVGDDLF 10 20 30 60 70 80 90 100 110 pF1KE1 NFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE ... .. :... :..: : .... :: :::: : .:::::. .:..::.::: CCDS54 HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRS 40 50 60 70 80 90 120 130 140 150 160 170 pF1KE1 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY .:.:.::..... .. :. .:::.::: : :.. . .:. ... CCDS54 QWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 100 110 120 130 140 180 pF1KE1 FERCLK >>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa) initn: 311 init1: 256 opt: 320 Z-score: 421.7 bits: 84.3 E(32554): 3.6e-17 Smith-Waterman score: 320; 31.9% identity (71.0% similar) in 138 aa overlap (33-165:5-139) 10 20 30 40 50 pF1KE1 KLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLL ::::....: . : :. . : :::. CCDS72 MALKRIQKELSDLQRDPPAHCS---AGPVGDDLF 10 20 30 60 70 80 90 100 110 pF1KE1 NFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE ... .. : .. :..: : .. . :: :::. : .:::::. .:..::.::: CCDS72 HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRS 40 50 60 70 80 90 120 130 140 150 160 170 pF1KE1 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY .:.:.::..... .. :. .:::.::: . :.. ..... ...... CCDS72 QWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 100 110 120 130 140 180 pF1KE1 FERCLK >>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa) initn: 291 init1: 259 opt: 318 Z-score: 419.1 bits: 83.8 E(32554): 5e-17 Smith-Waterman score: 318; 35.4% identity (71.5% similar) in 130 aa overlap (33-157:5-131) 10 20 30 40 50 pF1KE1 KLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLL ::.:....: . : :. . : ::.. CCDS36 MALKRINKELSDLARDPPAQCS---AGPVGDDMF 10 20 30 60 70 80 90 100 110 pF1KE1 NFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE ... .. :... :..: : .... :: :::: : .:::::. .:..::.::: CCDS36 HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 40 50 60 70 80 90 120 130 140 150 160 170 pF1KE1 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY .:.:.:::.... .. :. .:::.::: : :.. ...: CCDS36 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 100 110 120 130 140 180 pF1KE1 FERCLK >>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa) initn: 291 init1: 259 opt: 318 Z-score: 419.1 bits: 83.8 E(32554): 5.1e-17 Smith-Waterman score: 318; 35.4% identity (71.5% similar) in 130 aa overlap (33-157:5-131) 10 20 30 40 50 pF1KE1 KLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLL ::.:....: . : :. . : ::.. CCDS36 MALKRINKELSDLARDPPAQCS---AGPVGDDMF 10 20 30 60 70 80 90 100 110 pF1KE1 NFK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE ... .. :... :..: : .... :: :::: : .:::::. .:..::.::: CCDS36 HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 40 50 60 70 80 90 120 130 140 150 160 170 pF1KE1 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY .:.:.:::.... .. :. .:::.::: : :.. ...: CCDS36 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRLAREWTEKYAML 100 110 120 130 140 180 pF1KE1 FERCLK >>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa) initn: 291 init1: 259 opt: 308 Z-score: 406.0 bits: 81.4 E(32554): 2.7e-16 Smith-Waterman score: 308; 34.1% identity (71.3% similar) in 129 aa overlap (34-157:8-133) 10 20 30 40 50 pF1KE1 LFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDP--DDLLN ..:....: . : :. . : ::... CCDS36 MLSNRKCLSKELSDLARDPPAQCS---AGPVGDDMFH 10 20 30 60 70 80 90 100 110 pF1KE1 FK-LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRED .. .. :... :..: : .... :: :::: : .:::::. .:..::.::: . CCDS36 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 40 50 60 70 80 90 120 130 140 150 160 170 pF1KE1 WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYF :.:.:::.... .. :. .:::.::: : :.. ...: CCDS36 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 100 110 120 130 140 180 pF1KE1 ERCLK 183 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:11:50 2016 done: Sun Nov 6 13:11:51 2016 Total Scan time: 1.930 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]