FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6592, 202 aa 1>>>pF1KE6592 202 - 202 aa - 202 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.8839+/-0.000296; mu= 2.3592+/- 0.019 mean_var=147.3198+/-29.248, 0's: 0 Z-trim(123.1): 1 B-trim: 592 in 1/59 Lambda= 0.105668 statistics sampled from 42426 (42429) to 42426 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.497), width: 16 Scan time: 5.680 The best scores are: opt bits E(85289) NP_997715 (OMIM: 609762,614077) biogenesis of lyso ( 202) 1321 211.8 6.1e-55 >>NP_997715 (OMIM: 609762,614077) biogenesis of lysosome (202 aa) initn: 1321 init1: 1321 opt: 1321 Z-score: 1107.4 bits: 211.8 E(85289): 6.1e-55 Smith-Waterman score: 1321; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202) 10 20 30 40 50 60 pF1KE6 MASQGRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_997 MASQGRRRRPLRRPETVVPGEATETDSERSASSSEEEELYLGPSGPTRGRPTGLRVAGEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_997 AETDSEPEPEPEPTAAPRDLPPLVVQRESAEEAWGTEEAPAPAPARSLLQLRLAESQARL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 DHDVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVRLARGDLCALAERLDIVAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_997 DHDVAAAVSGVYRRAGRDVAALASRLAAAQAAGLAAAHSVRLARGDLCALAERLDIVAGC 130 140 150 160 170 180 190 200 pF1KE6 RLLPDIRGVPGTEPEKDPGPRA :::::::::::::::::::::: NP_997 RLLPDIRGVPGTEPEKDPGPRA 190 200 202 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:38:44 2016 done: Tue Nov 8 14:38:45 2016 Total Scan time: 5.680 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]