FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2282, 131 aa 1>>>pF1KE2282 131 - 131 aa - 131 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1849+/-0.000281; mu= 13.3032+/- 0.018 mean_var=80.3445+/-16.295, 0's: 0 Z-trim(119.7): 10 B-trim: 569 in 1/56 Lambda= 0.143086 statistics sampled from 34058 (34068) to 34058 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.399), width: 16 Scan time: 5.180 The best scores are: opt bits E(85289) XP_005259319 (OMIM: 607419) PREDICTED: gem-associa ( 131) 874 188.7 2.3e-48 NP_001007270 (OMIM: 607419) gem-associated protein ( 131) 874 188.7 2.3e-48 NP_001305984 (OMIM: 607419) gem-associated protein ( 131) 874 188.7 2.3e-48 NP_001305983 (OMIM: 607419) gem-associated protein ( 131) 874 188.7 2.3e-48 NP_001007271 (OMIM: 607419) gem-associated protein ( 131) 874 188.7 2.3e-48 XP_016882801 (OMIM: 607419) PREDICTED: gem-associa ( 131) 874 188.7 2.3e-48 XP_005259320 (OMIM: 607419) PREDICTED: gem-associa ( 131) 874 188.7 2.3e-48 NP_078983 (OMIM: 607419) gem-associated protein 7 ( 131) 874 188.7 2.3e-48 >>XP_005259319 (OMIM: 607419) PREDICTED: gem-associated (131 aa) initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48 Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR 70 80 90 100 110 120 130 pF1KE2 CSDIISYTFKP ::::::::::: XP_005 CSDIISYTFKP 130 >>NP_001007270 (OMIM: 607419) gem-associated protein 7 [ (131 aa) initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48 Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR 70 80 90 100 110 120 130 pF1KE2 CSDIISYTFKP ::::::::::: NP_001 CSDIISYTFKP 130 >>NP_001305984 (OMIM: 607419) gem-associated protein 7 [ (131 aa) initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48 Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR 70 80 90 100 110 120 130 pF1KE2 CSDIISYTFKP ::::::::::: NP_001 CSDIISYTFKP 130 >>NP_001305983 (OMIM: 607419) gem-associated protein 7 [ (131 aa) initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48 Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR 70 80 90 100 110 120 130 pF1KE2 CSDIISYTFKP ::::::::::: NP_001 CSDIISYTFKP 130 >>NP_001007271 (OMIM: 607419) gem-associated protein 7 [ (131 aa) initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48 Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR 70 80 90 100 110 120 130 pF1KE2 CSDIISYTFKP ::::::::::: NP_001 CSDIISYTFKP 130 >>XP_016882801 (OMIM: 607419) PREDICTED: gem-associated (131 aa) initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48 Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR 70 80 90 100 110 120 130 pF1KE2 CSDIISYTFKP ::::::::::: XP_016 CSDIISYTFKP 130 >>XP_005259320 (OMIM: 607419) PREDICTED: gem-associated (131 aa) initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48 Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR 70 80 90 100 110 120 130 pF1KE2 CSDIISYTFKP ::::::::::: XP_005 CSDIISYTFKP 130 >>NP_078983 (OMIM: 607419) gem-associated protein 7 [Hom (131 aa) initn: 874 init1: 874 opt: 874 Z-score: 989.2 bits: 188.7 E(85289): 2.3e-48 Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR 70 80 90 100 110 120 130 pF1KE2 CSDIISYTFKP ::::::::::: NP_078 CSDIISYTFKP 130 131 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:21:17 2016 done: Sun Nov 6 13:21:17 2016 Total Scan time: 5.180 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]