FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6601, 235 aa
  1>>>pF1KE6601 235 - 235 aa - 235 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1635+/-0.000714; mu= 15.0964+/- 0.043
 mean_var=61.8237+/-11.864, 0's: 0 Z-trim(108.6): 10  B-trim: 0 in 0/51
 Lambda= 0.163116
 statistics sampled from 10305 (10308) to 10305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.317), width:  16
 Scan time:  1.740

The best scores are:                                      opt bits E(32554)
CCDS12424.1 RGS9BP gene_id:388531|Hs108|chr19      ( 235) 1495 359.9 8.4e-100


>>CCDS12424.1 RGS9BP gene_id:388531|Hs108|chr19           (235 aa)
 initn: 1495 init1: 1495 opt: 1495  Z-score: 1905.3  bits: 359.9 E(32554): 8.4e-100
Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KE6 MAREECKALLDGLNKTTACYHHLVLTVGGSADSQNLRQELQKTRQKAQELAVSTCARLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAREECKALLDGLNKTTACYHHLVLTVGGSADSQNLRQELQKTRQKAQELAVSTCARLTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VLRDRGLAADERAEFERLWVAFSGCLDLLEADMRRALELGAAFPLHAPRRPLVRTGVAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VLRDRGLAADERAEFERLWVAFSGCLDLLEADMRRALELGAAFPLHAPRRPLVRTGVAGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SSGVAARALSTRSLRLEAEGDFDVADLRELEREVLQVGEMIDNMEMKVNVPRWTVQARQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SSGVAARALSTRSLRLEAEGDFDVADLRELEREVLQVGEMIDNMEMKVNVPRWTVQARQA
              130       140       150       160       170       180

              190       200       210       220       230     
pF1KE6 AGAELLSTVSAGPSSVVSLQERGGGCDPRKALAAILFGAVLLAAVALAVCVAKLS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AGAELLSTVSAGPSSVVSLQERGGGCDPRKALAAILFGAVLLAAVALAVCVAKLS
              190       200       210       220       230     




235 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:40:40 2016 done: Tue Nov  8 14:40:40 2016
 Total Scan time:  1.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]