Result of FASTA (omim) for pFN21AE1910
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1910, 444 aa
  1>>>pF1KE1910 444 - 444 aa - 444 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3344+/-0.000382; mu= 17.6382+/- 0.024
 mean_var=69.9508+/-13.575, 0's: 0 Z-trim(112.6): 66  B-trim: 103 in 1/53
 Lambda= 0.153348
 statistics sampled from 21462 (21530) to 21462 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.252), width:  16
 Scan time:  7.760

The best scores are:                                      opt bits E(85289)
NP_001276058 (OMIM: 602662) tubulin beta-4A chain  ( 444) 2983 669.3 5.8e-192
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 2983 669.3 5.8e-192
NP_001276056 (OMIM: 602662) tubulin beta-4A chain  ( 489) 2983 669.3 6.2e-192
NP_001276052 (OMIM: 602662) tubulin beta-4A chain  ( 495) 2983 669.3 6.3e-192
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 2944 660.6 2.3e-189
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 2893 649.3 5.7e-186
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 2885 647.6 1.9e-185
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 2866 643.4 3.6e-184
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 2787 625.9 6.6e-179
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 2776 623.5 3.5e-178
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 2776 623.5 3.5e-178
NP_001280141 (OMIM: 156610,191130,615771) tubulin  ( 464) 2771 622.4 7.8e-178
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 2749 617.5 2.2e-176
NP_001280143 (OMIM: 156610,191130,615771) tubulin  ( 400) 2518 566.4 4.9e-161
NP_001276059 (OMIM: 602662) tubulin beta-4A chain  ( 372) 2487 559.5 5.4e-159
NP_001276060 (OMIM: 602662) tubulin beta-4A chain  ( 372) 2487 559.5 5.4e-159
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 2424 545.6 9.9e-155
NP_001280144 (OMIM: 156610,191130,615771) tubulin  ( 372) 2418 544.2 2.1e-154
NP_001280145 (OMIM: 156610,191130,615771) tubulin  ( 372) 2418 544.2 2.1e-154
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 2361 531.6 1.3e-150
NP_001184110 (OMIM: 600638,602661,614039) tubulin  ( 378) 2351 529.4 6.2e-150
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 2322 523.0 5.2e-148
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 2273 512.2 1.1e-144
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 2253 507.7  2e-143
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 2222 500.9 2.4e-141
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409) 2213 498.9  1e-140
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2044 461.4 1.6e-129
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2044 461.4 1.6e-129
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1864 421.6 1.4e-117
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1864 421.6 1.4e-117
XP_011517762 (OMIM: 616768,616780) PREDICTED: tubu ( 291) 1671 378.9 9.7e-105
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 1290 294.7 3.3e-79
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 1282 292.9 1.1e-78
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 1282 292.9 1.1e-78
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 1261 288.3 2.8e-77
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain  ( 450) 1253 286.5 9.5e-77
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 1238 283.2 9.5e-76
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 1212 277.4   5e-74
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 1178 269.9 8.8e-72
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 1079 248.0 3.2e-65
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 1003 231.2 4.3e-60
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451)  993 229.0   2e-59
NP_001280142 (OMIM: 156610,191130,615771) tubulin  ( 242)  824 191.4 2.1e-48
XP_016860313 (OMIM: 191110,616208) PREDICTED: tubu ( 295)  770 179.6 9.9e-45
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain  ( 460)  615 145.4   3e-34
NP_001290454 (OMIM: 615103) tubulin beta-6 chain i ( 104)  557 132.2 6.5e-31
NP_057346 (OMIM: 607345) tubulin epsilon chain [Ho ( 475)  519 124.1 7.6e-28
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298)  510 122.0 2.1e-27
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298)  510 122.0 2.1e-27
XP_016879945 (OMIM: 605785) PREDICTED: tubulin gam ( 274)  475 114.3 4.1e-25


>>NP_001276058 (OMIM: 602662) tubulin beta-4A chain isof  (444 aa)
 initn: 2983 init1: 2983 opt: 2983  Z-score: 3567.4  bits: 669.3 E(85289): 5.8e-192
Smith-Waterman score: 2983; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:1-444)

               10        20        30        40        50        60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440    
pF1KE1 EYQQYQDATAEEGEFEEEAEEEVA
       ::::::::::::::::::::::::
NP_001 EYQQYQDATAEEGEFEEEAEEEVA
              430       440    

>>NP_006078 (OMIM: 602662) tubulin beta-4A chain isoform  (444 aa)
 initn: 2983 init1: 2983 opt: 2983  Z-score: 3567.4  bits: 669.3 E(85289): 5.8e-192
Smith-Waterman score: 2983; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:1-444)

               10        20        30        40        50        60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430       440    
pF1KE1 EYQQYQDATAEEGEFEEEAEEEVA
       ::::::::::::::::::::::::
NP_006 EYQQYQDATAEEGEFEEEAEEEVA
              430       440    

>>NP_001276056 (OMIM: 602662) tubulin beta-4A chain isof  (489 aa)
 initn: 2983 init1: 2983 opt: 2983  Z-score: 3566.8  bits: 669.3 E(85289): 6.2e-192
Smith-Waterman score: 2983; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:46-489)

                                             10        20        30
pF1KE1                               MREIVHLQAGQCGNQIGAKFWEVISDEHGI
                                     ::::::::::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
          20        30        40        50        60        70     

               40        50        60        70        80        90
pF1KE1 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
          80        90       100       110       120       130     

              100       110       120       130       140       150
pF1KE1 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
         140       150       160       170       180       190     

              160       170       180       190       200       210
pF1KE1 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
         200       210       220       230       240       250     

              220       230       240       250       260       270
pF1KE1 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
         260       270       280       290       300       310     

              280       290       300       310       320       330
pF1KE1 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
         320       330       340       350       360       370     

              340       350       360       370       380       390
pF1KE1 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
         380       390       400       410       420       430     

              400       410       420       430       440    
pF1KE1 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGEFEEEAEEEVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGEFEEEAEEEVA
         440       450       460       470       480         

>>NP_001276052 (OMIM: 602662) tubulin beta-4A chain isof  (495 aa)
 initn: 2983 init1: 2983 opt: 2983  Z-score: 3566.7  bits: 669.3 E(85289): 6.3e-192
Smith-Waterman score: 2983; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:52-495)

                                             10        20        30
pF1KE1                               MREIVHLQAGQCGNQIGAKFWEVISDEHGI
                                     ::::::::::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
              30        40        50        60        70        80 

               40        50        60        70        80        90
pF1KE1 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
              90       100       110       120       130       140 

              100       110       120       130       140       150
pF1KE1 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
             150       160       170       180       190       200 

              160       170       180       190       200       210
pF1KE1 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
             210       220       230       240       250       260 

              220       230       240       250       260       270
pF1KE1 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
             270       280       290       300       310       320 

              280       290       300       310       320       330
pF1KE1 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
             330       340       350       360       370       380 

              340       350       360       370       380       390
pF1KE1 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
             390       400       410       420       430       440 

              400       410       420       430       440    
pF1KE1 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGEFEEEAEEEVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGEFEEEAEEEVA
             450       460       470       480       490     

>>NP_006079 (OMIM: 602660) tubulin beta-4B chain [Homo s  (445 aa)
 initn: 2893 init1: 2893 opt: 2944  Z-score: 3520.7  bits: 660.6 E(85289): 2.3e-189
Smith-Waterman score: 2944; 98.4% identity (99.8% similar) in 445 aa overlap (1-444:1-445)

               10        20        30        40        50        60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::::::::::::::::::.::.:::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430        440    
pF1KE1 EYQQYQDATAEE-GEFEEEAEEEVA
       :::::::::::: ::::::::::::
NP_006 EYQQYQDATAEEEGEFEEEAEEEVA
              430       440     

>>NP_821133 (OMIM: 156610,191130,615771) tubulin beta ch  (444 aa)
 initn: 2909 init1: 2872 opt: 2893  Z-score: 3459.8  bits: 649.3 E(85289): 5.7e-186
Smith-Waterman score: 2893; 96.8% identity (99.3% similar) in 443 aa overlap (1-442:1-443)

               10        20        30        40        50        60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
       ::::::.:::::::::::::::::::::::::::::::::::::.::.:::::::::.::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_821 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::::::::::::::::::.::.:::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430        440    
pF1KE1 EYQQYQDATAEEGE-FEEEAEEEVA
       :::::::::::: : : ::::::  
NP_821 EYQQYQDATAEEEEDFGEEAEEEA 
              430       440     

>>NP_821080 (OMIM: 610031,612850) tubulin beta-2B chain   (445 aa)
 initn: 2892 init1: 2860 opt: 2885  Z-score: 3450.2  bits: 647.6 E(85289): 1.9e-185
Smith-Waterman score: 2885; 95.5% identity (99.1% similar) in 445 aa overlap (1-444:1-445)

               10        20        30        40        50        60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
       ::::::.:::::::::::::::::::::::::::.:::::::::::::::::::::..::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
       :::.::::::::::::::::::::::::::::::::::.::::::::::.::::::::::
NP_821 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::.:::::::::::::::.::.:::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430        440    
pF1KE1 EYQQYQDATAEE-GEFEEEAEEEVA
       ::::::::::.: ::::::  :. :
NP_821 EYQQYQDATADEQGEFEEEEGEDEA
              430       440     

>>NP_001060 (OMIM: 615101,615763) tubulin beta-2A chain   (445 aa)
 initn: 2873 init1: 2841 opt: 2866  Z-score: 3427.5  bits: 643.4 E(85289): 3.6e-184
Smith-Waterman score: 2866; 95.1% identity (98.9% similar) in 445 aa overlap (1-444:1-445)

               10        20        30        40        50        60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
       ::::::.:::::::::::::::::::::::::::.:::::::::::::::::::.:..::
NP_001 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_001 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
       :::.::::::::::::::::::::::::::::::::::.::::::::::.::::::::::
NP_001 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
       :::::::::::::::.:::::::::::::::.::.:::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430        440    
pF1KE1 EYQQYQDATAEE-GEFEEEAEEEVA
       ::::::::::.: ::::::  :. :
NP_001 EYQQYQDATADEQGEFEEEEGEDEA
              430       440     

>>NP_006077 (OMIM: 600638,602661,614039) tubulin beta-3   (450 aa)
 initn: 2768 init1: 2768 opt: 2787  Z-score: 3333.0  bits: 625.9 E(85289): 6.6e-179
Smith-Waterman score: 2787; 92.3% identity (98.2% similar) in 443 aa overlap (1-442:1-443)

               10        20        30        40        50        60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
       ::::::.:::::::::::::::::::::::::.:.: ::::::::::.::::::.. .::
NP_006 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
       :::.::::::::::::::: ::..::::::.:::::::::::::::::::::::.:::::
NP_006 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
       ::: :.::::::::::::::::::::::::::::.:::.:::::::::::::::::::::
NP_006 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       ::::::::.::::::::::::::::::::::::::::.:::::::::::::::::::: :
NP_006 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
       ::::::::::::::.::::::::::::::::..:::::::::::::::::.:::::::::
NP_006 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       :::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430        440         
pF1KE1 EYQQYQDATAEE-GEFEEEAEEEVA     
       :::::::::::: ::. :. :::       
NP_006 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
              430       440       450

>>NP_001290453 (OMIM: 615103) tubulin beta-6 chain isofo  (446 aa)
 initn: 2772 init1: 2772 opt: 2776  Z-score: 3319.9  bits: 623.5 E(85289): 3.5e-178
Smith-Waterman score: 2776; 92.3% identity (97.5% similar) in 443 aa overlap (1-441:1-443)

               10        20        30        40        50        60
pF1KE1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
       ::::::.::::::::::.::::::::::::::.: : ::: ::::::::::::... .::
NP_001 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
       :::.:::::::::::::::::::.::::::.:::.:::::::::::::::::::::::::
NP_001 PRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
       ::: : :::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_001 RKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_001 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDARNMM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
       ::::::::::::::.:::: :::::::::::..:::::::::::::::::.:::::::::
NP_001 AACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
       ::::.::::::::::::::::::::.:::::::::::.::::::::::::::::::::::
NP_001 LKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVS
              370       380       390       400       410       420

              430         440    
pF1KE1 EYQQYQDATAEEGE--FEEEAEEEVA
       ::::::::::..::  ::.: ::   
NP_001 EYQQYQDATANDGEEAFEDEEEEIDG
              430       440      




444 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:30:54 2016 done: Sun Nov  6 13:30:55 2016
 Total Scan time:  7.760 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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