FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5970, 560 aa 1>>>pF1KB5970 560 - 560 aa - 560 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.1720+/-0.000752; mu= 6.9725+/- 0.045 mean_var=174.1479+/-35.739, 0's: 0 Z-trim(115.3): 32 B-trim: 13 in 1/50 Lambda= 0.097189 statistics sampled from 15824 (15854) to 15824 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.487), width: 16 Scan time: 4.520 The best scores are: opt bits E(32554) CCDS12085.1 AMH gene_id:268|Hs108|chr19 ( 560) 3806 545.6 6e-155 >>CCDS12085.1 AMH gene_id:268|Hs108|chr19 (560 aa) initn: 3806 init1: 3806 opt: 3806 Z-score: 2895.2 bits: 545.6 E(32554): 6e-155 Smith-Waterman score: 3806; 99.8% identity (100.0% similar) in 560 aa overlap (1-560:1-560) 10 20 30 40 50 60 pF1KB5 MRDLPLTSLALVLSALGALLGTEALRAEEPAVGTSGLIFREDLDWPPGSPQEPLCLVALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MRDLPLTSLALVLSALGALLGTEALRAEEPAVGTSGLIFREDLDWPPGSPQEPLCLVALG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 GDSNGSSSPLRVVGALSAYEQAFLGAVQRARWGPRDLATFGVCNTGDRQAALPSLRRLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 GDSNGSSSPLRVVGALSAYEQAFLGAVQRARWGPRDLATFGVCNTGDRQAALPSLRRLGA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 WLRDPGGQRLVVLHLEEVTWEPTPSLRFQEPPPGGAGPPELALLVLYPGPGPEVTVTRAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 WLRDPGGQRLVVLHLEEVTWEPTPSLRFQEPPPGGAGPPELALLVLYPGPGPEVTVTRAG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 LPGAQSLCPSRDTRYLVLAVDRPAGAWRGSGLALTLQPRGEDSRLSTARLQALLFGDDHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LPGAQSLCPSRDTRYLVLAVDRPAGAWRGSGLALTLQPRGEDSRLSTARLQALLFGDDHR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 CFTRMTPALLLLPRSEPAPLPAHGQLDTVPFPPPRPSAELEESPPSADPFLETLTRLVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 CFTRMTPALLLLPRSEPAPLPAHGQLDTVPFPPPRPSAELEESPPSADPFLETLTRLVRA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LRVPPARASAPRLALDPDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTGDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LRVPPARASAPRLALDPDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTGDP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 APLHDPTSAPWATALARRVAAELQAAAAELRSLPGLPPATAPLLARLLALCPGGPGGLGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 APLHDPTSAPWATALARRVAAELQAAAAELRSLPGLPPATAPLLARLLALCPGGPGGLGD 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 PLRALLLLKALQGLRVEWRGRDPRGPGRAQRSAGATAADGPCALRELSVDLRAERSVLIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PLRALLLLKALQGLRVEWRGRDPRGPGRAQRSAGATAADGPCALRELSVDLRAERSVLIP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB5 ETYQANNCQGVCGWPQSDRNPRYGNHVVLLLKMQARGAALARPPCCVPTAYAGKLLISLS ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: CCDS12 ETYQANNCQGVCGWPQSDRNPRYGNHVVLLLKMQVRGAALARPPCCVPTAYAGKLLISLS 490 500 510 520 530 540 550 560 pF1KB5 EERISAHHVPNMVATECGCR :::::::::::::::::::: CCDS12 EERISAHHVPNMVATECGCR 550 560 560 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:35:10 2016 done: Sun Nov 6 13:35:11 2016 Total Scan time: 4.520 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]