FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6186, 168 aa 1>>>pF1KE6186 168 - 168 aa - 168 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8752+/-0.000352; mu= 15.2481+/- 0.022 mean_var=63.3923+/-12.931, 0's: 0 Z-trim(114.7): 22 B-trim: 821 in 2/55 Lambda= 0.161085 statistics sampled from 24642 (24651) to 24642 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.289), width: 16 Scan time: 3.970 The best scores are: opt bits E(85289) NP_001001975 (OMIM: 603150) ATP synthase subunit d ( 168) 1035 248.6 3.5e-66 NP_001678 (OMIM: 603150) ATP synthase subunit delt ( 168) 1035 248.6 3.5e-66 >>NP_001001975 (OMIM: 603150) ATP synthase subunit delta (168 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 1309.1 bits: 248.6 E(85289): 3.5e-66 Smith-Waterman score: 1035; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168) 10 20 30 40 50 60 pF1KE6 MLPAALLRRPGLGRLVRHARAYAEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLPAALLRRPGLGRLVRHARAYAEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAV 70 80 90 100 110 120 130 140 150 160 pF1KE6 TLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE 130 140 150 160 >>NP_001678 (OMIM: 603150) ATP synthase subunit delta, m (168 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 1309.1 bits: 248.6 E(85289): 3.5e-66 Smith-Waterman score: 1035; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168) 10 20 30 40 50 60 pF1KE6 MLPAALLRRPGLGRLVRHARAYAEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLPAALLRRPGLGRLVRHARAYAEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAV 70 80 90 100 110 120 130 140 150 160 pF1KE6 TLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE 130 140 150 160 168 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:10:55 2016 done: Tue Nov 8 10:10:56 2016 Total Scan time: 3.970 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]