Result of FASTA (ccds) for pFN21AE1863
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1863, 382 aa
  1>>>pF1KE1863 382 - 382 aa - 382 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.4422+/-0.000978; mu= -14.6599+/- 0.059
 mean_var=380.0083+/-76.387, 0's: 0 Z-trim(116.5): 11  B-trim: 0 in 0/55
 Lambda= 0.065793
 statistics sampled from 17068 (17075) to 17068 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.525), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS12028.1 MADCAM1 gene_id:8174|Hs108|chr19       ( 382) 2586 258.7 6.1e-69
CCDS12029.1 MADCAM1 gene_id:8174|Hs108|chr19       ( 295) 1483 154.0 1.6e-37


>>CCDS12028.1 MADCAM1 gene_id:8174|Hs108|chr19            (382 aa)
 initn: 2586 init1: 2586 opt: 2586  Z-score: 1351.2  bits: 258.7 E(32554): 6.1e-69
Smith-Waterman score: 2586; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)

               10        20        30        40        50        60
pF1KE1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR
              310       320       330       340       350       360

              370       380  
pF1KE1 LLPQVSAWAGLRGTGQVGISPS
       ::::::::::::::::::::::
CCDS12 LLPQVSAWAGLRGTGQVGISPS
              370       380  

>>CCDS12029.1 MADCAM1 gene_id:8174|Hs108|chr19            (295 aa)
 initn: 1961 init1: 1479 opt: 1483  Z-score: 787.0  bits: 154.0 E(32554): 1.6e-37
Smith-Waterman score: 1791; 77.0% identity (77.2% similar) in 382 aa overlap (1-382:1-295)

               10        20        30        40        50        60
pF1KE1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES
       ::::::::::::::::::::::::::::::::::::::::::                  
CCDS12 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIP------------------
              190       200       210       220                    

              250       260       270       280       290       300
pF1KE1 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP
                                                                   
CCDS12 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KE1 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR
                .::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ---------ASKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR
                     230       240       250       260       270   

              370       380  
pF1KE1 LLPQVSAWAGLRGTGQVGISPS
       ::::::::::::::::::::::
CCDS12 LLPQVSAWAGLRGTGQVGISPS
           280       290     




382 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:38:25 2016 done: Sun Nov  6 13:38:26 2016
 Total Scan time:  3.390 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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