FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1863, 382 aa 1>>>pF1KE1863 382 - 382 aa - 382 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.4422+/-0.000978; mu= -14.6599+/- 0.059 mean_var=380.0083+/-76.387, 0's: 0 Z-trim(116.5): 11 B-trim: 0 in 0/55 Lambda= 0.065793 statistics sampled from 17068 (17075) to 17068 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.525), width: 16 Scan time: 3.390 The best scores are: opt bits E(32554) CCDS12028.1 MADCAM1 gene_id:8174|Hs108|chr19 ( 382) 2586 258.7 6.1e-69 CCDS12029.1 MADCAM1 gene_id:8174|Hs108|chr19 ( 295) 1483 154.0 1.6e-37 >>CCDS12028.1 MADCAM1 gene_id:8174|Hs108|chr19 (382 aa) initn: 2586 init1: 2586 opt: 2586 Z-score: 1351.2 bits: 258.7 E(32554): 6.1e-69 Smith-Waterman score: 2586; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382) 10 20 30 40 50 60 pF1KE1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR 310 320 330 340 350 360 370 380 pF1KE1 LLPQVSAWAGLRGTGQVGISPS :::::::::::::::::::::: CCDS12 LLPQVSAWAGLRGTGQVGISPS 370 380 >>CCDS12029.1 MADCAM1 gene_id:8174|Hs108|chr19 (295 aa) initn: 1961 init1: 1479 opt: 1483 Z-score: 787.0 bits: 154.0 E(32554): 1.6e-37 Smith-Waterman score: 1791; 77.0% identity (77.2% similar) in 382 aa overlap (1-382:1-295) 10 20 30 40 50 60 pF1KE1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES :::::::::::::::::::::::::::::::::::::::::: CCDS12 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIP------------------ 190 200 210 220 250 260 270 280 290 300 pF1KE1 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP CCDS12 ------------------------------------------------------------ 310 320 330 340 350 360 pF1KE1 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR .:::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ---------ASKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR 230 240 250 260 270 370 380 pF1KE1 LLPQVSAWAGLRGTGQVGISPS :::::::::::::::::::::: CCDS12 LLPQVSAWAGLRGTGQVGISPS 280 290 382 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 13:38:25 2016 done: Sun Nov 6 13:38:26 2016 Total Scan time: 3.390 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]